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View Structure Prediction Details

Protein: gi|42571275
Organism: Arabidopsis thaliana
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571275.

Description E-value Query
Range
Subject
Range
SETH6_ARATH - BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1
622.0 [0..1] [517..119]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDLSEKNL EARTEAYLKD SIFNDISNSI TVLHSCERLL PVAEEINLVG RLVNAIAVNA  60
   61 CKEQLASGLL KLDQSFSCGV PETAKPC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWWGRSLPIL KLDFFQRVLS AMKSKGLNHD IISDILMSYA RKSLQIIREP NLVKSDSDLQ  60
   61 RKQRIVLEAV VGLLPTQANK SSIPISFLSS LLKTAIGSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [187-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVSCRSDLE RRISHLLDQA ILEDILIPAN IGAMYDTDSV QRIFSMFLNL DECEYRDDDD  60
   61 DEEDAVDESE MAMYDFEGAE SPKQSSIFKV SKLMDSYLAE VALDSSLPPS KFIALAELLP 120
  121 DHARVVCDGL YRAVDIFLKV H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [328-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHMKDSERYR LCKTVSCKKL SQDASSHAAQ NERLPVQIAV QVLFYEQTRL KNAMTSGGGT  60
   61 GGSNQSQFFL FPNRSGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [405-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMASGAISPR DNYASVRREN RELRLEVARM RMRLTDLEKD HVSMKRDFVK PQSRRRRYGM  60
   61 LRKLSRGLNK LNAIVLRFRS SQSVASSGKK HTEEKTNSER RFMFQKRRCH SVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle