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View Structure Prediction Details

Protein: gi|42571209, gi|...
Organism: Arabidopsis thaliana
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571209, gi|....

Description E-value Query
Range
Subject
Range
gi|18406178, gi|... - gi|21554179|gb|AAM63258.1| unknown [Arabidopsis thaliana], gi|20197152|gb|AAC64308.2| expressed prot...
376.0 [0..1] [295..1]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTETVVHDQ ARWAMAAMER RLAVAKAQLL QQQQQKNEKD KKGTSDVDVS MKESHQADSL  60
   61 PTPSKTSIKK DPKDDDSVAY TKLSHPVDEN LLATNVKFSS AKGTIVDKVL HNLLRSGDSA 120
  121 QKYLQGTKSV KLDNYILLDN FVQSRSSASG SKKASQKDSK RSKSRMSMKR LKKSGALHIP 180
  181 KDLQKFDLFK PMHGMWESYM MKLIKVTGKI QLSLTLLSAD LH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAFMFVAECK IASFTGVQGI MVRETSETFG IITRDDKFRV VPKKLSVFII QLDCWKITLH  60
   61 GDKFISRDNI VQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.221849
Match: 1v76A
Description: Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle