YRC Public Data Repository - Protein Structure Prediction

Protein:	STR7_ARATH
Organism:	Arabidopsis thaliana
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STR7_ARATH.

Description	E-value	Query Range	Subject Range
gi\|62321639 - gi\|62321639\|dbj\|BAD95247.1\| rhodanese like protein [Arabidopsis thaliana]	430.0	[0..33]	[474..16]
gi\|94428786, gi\|... - gi\|94499154\|ref\|ZP_01305692.1\| predicted sulfurtransferase [Oceanobacter sp. RED65], gi\|94428786\|gb\|...	391.0	[0..97]	[471..1]
gi\|90577791, gi\|... - gi\|90577791\|ref\|ZP_01233602.1\| hypothetical protein VAS14_12109 [Vibrio angustum S14], gi\|90440877\|g...	379.0	[0..101]	[472..1]
Y522_HAHCH - UPF0176 protein HCH_00522 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_00522 PE=3 SV=1	378.0	[0..101]	[471..1]
gi\|89073780, gi\|... - gi\|89073780\|ref\|ZP_01160294.1\| hypothetical protein SKA34_11565 [Photobacterium sp. SKA34], gi\|89050...	377.0	[0..101]	[472..1]
Y2261_SHESA - UPF0176 protein Shewana3_2261 OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2261 PE=3 SV=1	377.0	[0..101]	[473..1]
Y1760_SHESM - UPF0176 protein Shewmr4_1760 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_1760 PE=3 SV=1	377.0	[0..101]	[473..1]
Y2481_SHEB9 - UPF0176 protein Sbal195_2481 OS=Shewanella baltica (strain OS195) GN=Sbal195_2481 PE=3 SV=1	375.0	[0..101]	[470..1]
Y2378_SHEB5 - UPF0176 protein Sbal_2378 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=Sbal_2378 PE=3 SV=...	375.0	[0..101]	[470..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFYHWRFP PSLAVVRMLS SPPPPHSHSP FSGGGVNSNS VGGNSKPELQ FPQSQPHKLS  60
   61 SSPSSSLKST VACSNAGAIR RSMATVSQAF SERTESIDSD LGSLVVVSFY K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FADFPEHADF RKPLKDLCEK LRVSGGIILA PEGINGSICG IRESVEEVLA FIQRDVRLNG  60
   61 LRQVETPVSP EQEAIHHGHS SSSPLAAGED APFRWDHVRV KLKKEIVTLG IPSVSPIERV 120
  121 GTYVSPEEWN ELISDPETVV IDVRNTYETR IGKFKGAVDP CTTAFRNFPS WVENQFALKQ 180
  181 EGNETQAKVE KEDFSEITHK EDKAEKPKTL PRIAMYCTGG IRCEKASSLL LSQGFEEVYH 240
  241 LKGGILKYLE EVPKTESLWE GECFVFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [379-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRVSVEHGLA QGTHKLCYGC KQPISDEDME APEYEYGVSC PYCYSKKSEE EKERARARQT  60
   61 QFEEWGVIGG PDKGRRPATK PDSPRKKINA KLGSSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits