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View Structure Prediction Details

Protein: PUB63_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB63_ARATH.

Description E-value Query
Range
Subject
Range
gi|27413505 - gi|27413505|gb|AAO11670.1| hypothetical protein [Arabidopsis thaliana]
433.0 [0..1] [383..1]
gi|50919395, gi|... - gi|50919395|ref|XP_470094.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|28876...
165.0 [0..114] [383..79]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLRRRRFK LSLCALPVSI DRLLNFPAEK QMSVNDSIDP RFVFHVEDES LRFRVGDSGT  60
   61 KIRELETVGD RHFRTQQGFC GNRIEKDETM YSD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDDEEYDVSI RRRTALIQPG IDSGNNYDSA AAEETNRESK NPVGWELVVR EDGEGNSTID  60
   61 RHEMEFKVRI TKPDGNVSNS HRNTQQKRDF ASVEKERVTT TSVSSWESLK AILSDPVTGA 120
  121 LMNDATILPC GHSFGAGGLK EVKKMKACFT CSQPTLEGSE KPNLSLRIVV HAFRQEEDSD 180
  181 HIHTLKRRKE RSDQKRSFCI PNITETPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2f42A
Description: No description for 2f42A was found.

Predicted Domain #3
Region A:
Residues: [302-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSRGIQFPFS IGDHIIIEGN KRTPPRFVGR IAVIMTQCLN GWYVVKTVDN SESIKLQHCS  60
   61 LAKISDNSST KVTVAEMPPS WL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.825 N/A N/A b.76.2 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle