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View Structure Prediction Details

Protein: gi|42569794, gi|...
Organism: Arabidopsis thaliana
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569794, gi|....

Description E-value Query
Range
Subject
Range
gi|145360829, gi... - gi|67848438|gb|AAY82252.1| hypothetical protein At2g40316 [Arabidopsis thaliana], gi|145360829|ref|N...
415.0 [0..3] [214..65]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGCLLHQL CDVLIFNHDP PRCVGCEDCG GPSHCGTSCS ALVSENVRGY DVCTSLGHAS  60
   61 STKVDIIDKE DPGKGVIVQM STGNRNQNCS LSVSVICQKT KVDGPLTLAK SGTCQYATQL 120
  121 RHPAGCAAAI SGHSSG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.83
Match: 2cnjD
Description: No description for 2cnjD was found.

Predicted Domain #2
Region A:
Residues: [137-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGWFSTLLII ILCLFGAYLV GGAVYRYFSL GIRGIDVIPN MDYWATVPHS IQSCFGSLFS  60
   61 RFGGSIRGQQ TSYSQVNF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle