YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42571113, gi|...
Organism: Arabidopsis thaliana
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571113, gi|....

Description E-value Query
Range
Subject
Range
CAX1_ARATH - Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3
305.0 [0..1] [439..1]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIVTEPWS VAENGNPSIT AKGSSRELRL GRTAHNMSSS SLRKKSDLRV IQKVPYKGLK  60
   61 DFLSNLQEVI LGTKLAILFP AIPAAIICTY C

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSQPWIFGL SLLGLTPLAE RVSFLTEQLA FYTGPTLGGL LNATCGNATE LIIAILALTN  60
   61 NKVAVVKYSL LGSILSNLLL VLGTSLFCGG IANIRREQRF DRKQADVNFF LLLLGFLCHL 120
  121 LPLLVGYLKN GEASAAVLSD MQLSISRGFS IVMLISYIAY LVFQLWTHRQ LFD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 23.481486
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQEQEDEYDD DVEQETAVIS FWSGFAWLVG MTLVIALLSE YVVATIEEAS DKWNLSVSFI  60
   61 SIILLPIVGN AAEHAGAVIF AFKNKLDISL GVALGSATQI GLFVVPLTII VAWILGINMD 120
  121 LNFGPLETGC LAVSIIITAF TLQDGSSHYM KGLVLLLCYF IIAICFFVDK LPQSELVFKC 180
  181 ICMLLLGKTI IEAYNTHISN GNASSNKVKT G

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.29243
Match: PF01699.15
Description: No description for PF01699.15 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle