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View Structure Prediction Details

Protein: RRS1_ARATH
Organism: Arabidopsis thaliana
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|109086632 - gi|109086632|ref|XP_001100635.1| PREDICTED: similar to homolog of yeast ribosome biogenesis regulato...
362.0 [0..5] [318..191]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTEMETEQI YQVDVGNLLA FNPNHRFPSA PSSRGELVKE ILTEGTKLVQ EIANKLFNFP  60
   61 STETNDGPIV QLPPPTTKLP REKHIPRPKP PTKWEEFALK KGIQKRKKEK VVWDEQTNQF 120
  121 KRRHGYDRVN DDNDVPIIEA KESDEPGVDP FAKRLDDKKK RVGKQEKNRL QNLKAAEKAG 180
  181 ALPSHVQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 118.677781
Match: PF04939.3
Description: No description for PF04939.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [188-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAATSLPISG TKAQPKKIGK DELGDVAGLA ATSTASGGKF DKKLPGEKPP KKQGKHHKYL  60
   61 PVVSGRGDVN AEKEQTNNVL SKIFSKHSHE ILNVGKAINM YNVKKEKKKS GRSDKLKPKK 120
  121 DITKKPANKA K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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