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View Structure Prediction Details

Protein: gi|186506220, gi...
Organism: Arabidopsis thaliana
Length: 493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186506220, gi....

Description E-value Query
Range
Subject
Range
gi|4769012 - gi|4769012|gb|AAD29719.1|AF143746_1 CER1 [Oryza sativa]
gi|4769012 - gb|AAD29719.1| CER1 [Oryza sativa]
452.0 [0..1] [484..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRPGFLTD WPWTPLGSFK YLLLAPLVFD SIYSYATIRD HEKLLIVAVT VWRIVHSQIW  60
   61 ISLSRYQTAK GTKRILNKSI EFDQVDRERT W

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDQIIFNTLI VYLTKVYVSG TSTIPFWRTD GVILVALLHA GPVEFIYYWF HRALHHHFLY  60
   61 SRYHSHHHSS IVTEPITSVV HPFAEHIGYT LILGLPLITT FMCGTVSVVS IALYLTYIDF 120
  121 MNNMGHCNFE LIPKFLFSLL PPLKFLCYTP SFHSLHHTQF RTNYSLFMPM YDYIYGT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 23.886057
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDECSDSLYE TSLEKEEEKP DAIHLTHLTS LDSIYHLRLG FASLSSHPLS SRCYLFLMKP  60
   61 FALILSFILR SFSFQTFVVE RNRFRDLTLH SHLLPKFSSH YMSHQQKECI NKMIEAAILE 120
  121 ADKKGVKVMS LGLLNQGEEL NGYGEMYVRR HPKLKIRIVD GGSLAAEVVL HSIPVGTKEV 180
  181 LFRGQITKVA RAIVFSLCQN AIKVPSFSTN GESETKGFNL DGPFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle