YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|61742649, gi|...
Organism: Arabidopsis thaliana
Length: 259 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61742649, gi|....

Description E-value Query
Range
Subject
Range
gi|23092567 - gi|23092567|gb|AAN08440.1| hypothetical protein [Arabidopsis thaliana]
224.0 [0..1] [259..1]

Back

Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRMFCASQ ASTAICSSMD HVHKSTTTDE DERNSGRAID RHNPIIKDGR RSFADDFIKL  60
   61 PTSAEDGEMS NKKLEIYKGR RSITGRRSTG GGGGGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.432 d.206.1 YggU-like
View Download 0.353 c.47.1 Thioredoxin-like
View Download 0.252 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.244 d.79.3 L30e-like
View Download 0.235 a.39.1 EF-hand

Predicted Domain #2
Region A:
Residues: [97-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAALLKLITN DIGLARKSFS CVARPACDLI KTPVGSTRYL LGSDPDSITG SVDQDPAKTV  60
   61 EAEAPAGEDK TLTEKKTTCG DTDQQVVVLK VSLHCRGCEG KVRKHLARMQ GVTSFNIDFA 120
  121 AKKVTVTGDI TPLEILDSIS KVKNAQFWTN PTIPKPNVET QNP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2ew9A
Description: No description for 2ew9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle