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View Structure Prediction Details

Protein: IPCS3_ARATH
Organism: Arabidopsis thaliana
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPCS3_ARATH.

Description E-value Query
Range
Subject
Range
IPCS1_ARATH - Phosphatidylinositol:ceramide inositolphosphotransferase 1 OS=Arabidopsis thaliana GN=IPCS1 PE=2 SV=...
356.0 [0..1] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYVDREAP KLWRRIYSEA TLEASLLAEK WKLVLAGLVF QYIHGLAAHG VHYLHRPGPT  60
   61 LQDAGFFILP ALGQDKAFFS ETVFVTIFGS FILWTFHPFV SHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.682 N/A N/A a.112.1 Description not found.
View Download 0.615 N/A N/A a.17.1 p8-MTCP1
View Download 0.606 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.546 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.541 N/A N/A a.7.6 Ribosomal protein S20

Predicted Domain #2
Region A:
Residues: [104-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKICTVLIWC RVFVYLAASQ SLRIITFFAT QLPGPNYHCR EGSKLAKIPP PKNVLEVLLI  60
   61 NFPD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [168-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVIYGCGDLI FSSHTIFTLV FVRTYQRYGT RRWIKHLAWL MAVIQSILII ASRKHYTVDI  60
   61 VVAWYTVNLV MFYVDSKLPE MAERSSGPSP TPLLPLSTKD SKNKSKEDHQ RLLNENNVAD 120
  121 DH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.58
Match: 1d2tA
Description: Bacterial acid phosphatase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle