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View Structure Prediction Details

Protein: RBL1_ARATH
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL1_ARATH.

Description E-value Query
Range
Subject
Range
RBL4_ARATH - RHOMBOID-like protein 4 OS=Arabidopsis thaliana GN=RBL4 PE=2 SV=1
293.0 [0..37] [389..47]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP  60
   61 AIVVANIALF AISMFI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNCPKNSAYC LARFLGRFAF QPMKENPLLG PSSLTLEKMG ALDVSMVVHK HEVWRLFTCI  60
   61 WLHAGVFHVL ANMLSLIFIG IRLEQEFGFV RIGLLYMISG FGGSLLSSLF NRAGISVGAS 120
  121 GALFGLLGAM LSELLTNWTI YANKFAALLT LIFIIAINLA VGILPHVDNF AHLGGFTSGF 180
  181 LLGFVFLIRP QYGYFNQRNN PRGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 2ic8A
Description: No description for 2ic8A was found.

Predicted Domain #3
Region A:
Residues: [281-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPSAKSKHK PYQYVLWITS LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS  60
   61 CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1j0pA
Description: Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle