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View Structure Prediction Details

Protein: gi|30685076
Organism: Arabidopsis thaliana
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685076.

Description E-value Query
Range
Subject
Range
ILVH2_ARATH - Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1
528.0 [0..1] [468..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAISVSSSP SIRCLRSACS DSSPALVSST RVSFPAKISY LSGISSHRGD EMGKRMEGFV  60
   61 RSVDGKISDA SFSEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.522879
Match: 1ygyA
Description: Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [76-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSATPKSKVR KHTISVFVGD ESGMINRIAG VFARRGYNIE SLAVGLNRDK ALFTIVVCGT  60
   61 ERVLQQVIEQ LQKLVNVLKV EDISSEPQVE RELMLVKVNA HPESRAEIMW LVDTFRARVV 120
  121 DIAEHALTIE VTGDPGKMIA VERNLKKFQI REIVRTGKIA LRREKMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 2fgcA
Description: Crystal structure of Acetolactate synthase- small subunit from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
acetolactate synthase activity 14.1096734416761 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 12.4176994384119 bayes_pls_golite062009
catalytic activity 0.645256181736122 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [243-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATAPFWRFSA ASYPDLKEQA PVSVLRSSKK GAIVPQKETS AGGDVYPVEP FFDPKVHRIL  60
   61 DAHWGLLTDE DTSGLRSHTL SLLVNDIPGV LNIVTGVFAR RGYNIQSLAV GHAETKGISR 120
  121 ITTVIPATDE SVSKLVQQLY KLVDVHEVHD LTHLPFSERE LMLIKIAVNA AARRDVLDIA 180
  181 SIFRAKAVDV SDHTITLQVA RTGRVALARE SGVDSKYLRG YSFPLTG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.09691
Match: 2pc6A
Description: No description for 2pc6A was found.

Predicted functions:

Term Confidence Notes
acetolactate synthase activity 14.1096734416761 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 12.4176994384119 bayes_pls_golite062009
catalytic activity 0.645256181736122 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle