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View Structure Prediction Details

Protein: gi|190576479, gi...
Organism: Arabidopsis thaliana
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190576479, gi....

Description E-value Query
Range
Subject
Range
gi|110616993, gi... - gi|110807445|ref|YP_690965.1| putative GTP-binding factor [Shigella flexneri 5 str. 8401], gi|110616...
495.0 [0..1] [527..49]

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Predicted Domain #1
Region A:
Residues: [1-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL  60
   61 FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE 120
  121 PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT DSGSEKIEEA KVVKLMKKKG 180
  181 TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA 240
  241 GQDGTHLTGG RIGDRLMAEA ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL 300
  301 SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR 360
  361 LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH 420
  421 SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK AKELTNIRSA GKDENVKLSP 480
  481 PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 1zn0B
Description: Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle