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View Structure Prediction Details

Protein: gi|30684625
Organism: Arabidopsis thaliana
Length: 464 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30684625.

Description E-value Query
Range
Subject
Range
PLA16_ARATH - Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2
410.0 [0..1] [450..1]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIPSHNNL LTINHKNSIT GSSSLNTNFS EINFPAKFRV ATRALSRTDE SSLSAVISRL  60
   61 ERERRERQGL LIEEAEGAGE LWMTAEDIRR RDKKTEEERR LRDTWRKIQG EDDWAGLMDP 120
  121 MDPILRSELI RYGEMAQACY DAFDFDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKYCGTSRF TRLEFFDSLG MIDSGYEVAR YLYATSNINL PNFFSKSRWS KVWSKNANWM  60
   61 GYVAVSDDET SRNRLGRRDI AIAWRGTVTK LEWIADLKDY LKPVTENKIR CPDPAVKVES 120
  121 GFLDLYTDKD TTCKFARFSA REQILTEVKR LVEEHGDDDD SDLSITVTGH SLGGALAILS 180
  181 AYDIAEMRLN RSKKGKVIPV TVLTYGGPRV GNVRFRERME ELGVKVMRVV NVHDVVPKSP 240
  241 GLFLNESRPH ALMKIAEGLP WCYSHVGEEL ALDHQNSPFL KPSVDVSTAH NLEAMLHLLD 300
  301 GYVSFLFYFS LFIYSCS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 4tglA
Description: CATALYSIS AT THE INTERFACE: THE ANATOMY OF A CONFORMATIONAL CHANGE IN A TRIGLYCERIDE LIPASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle