| Protein: | MED8_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 524 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED8_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
482.0 | [0..1] | [524..1] |
|
|
395.0 | [0..12] | [515..25] |
|
|
160.0 | [0..259] | [520..442] |
|
|
159.0 | [0..269] | [513..433] |
|
|
157.0 | [0..259] | [520..434] |
|
|
156.0 | [0..227] | [513..395] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 METQPQQPPP PPVAEKLNPK LEKELNLESL KTRAVSLAKA IARILEDFDA YGRTNTTPKW 60
61 QDILGQYSMV NLELFNIVEE VKRVSNAFVV LPKNVNAMNA AILPVMLSSK LLPEMETDDN 120
121 AKREQLLQGV QSLPIPMQIE RLKARMDMIA AACENAERVL ADTRKAY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [168-315] |
1 11 21 31 41 51
| | | | | |
1 GFGTRQGPSM LPTMDKGQAA KIQEQEKMLR DAVNDGKGTQ LPPDQRQITT ALPPHLADVL 60
61 IINDAGKIAL PGQSNNINNQ GMMQVSGTQF VGRSAASPSG PNFDNTTSPL PYSNSPRATG 120
121 MVNVPSPQHQ IQQQQFQQQQ QRSKLMQL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.277 | a.118.8 | TPR-like |
| View | Download | 0.219 | c.10.1 | RNI-like |
| View | Download | 0.206 | c.14.1 | ClpP/crotonase |
| View | Download | 0.202 | a.25.1 | Ferritin-like |
| View | Download | 0.202 | a.25.1 | Ferritin-like |
|
Region A: Residues: [316-524] |
1 11 21 31 41 51
| | | | | |
1 PQHQQQQLLA QQQQQLRQSS MQGLGQSQIP ALHDMHGQAQ QKFQTSHGQH QMPYSQPMGA 60
61 HQQFQARQLS GGHIQHSMSQ GQLNPAMNRH LNQFSGGANS ALFTSAQGSP SSQMIPNMSS 120
121 MQSQTLVPRM QQFGVSGTNP QRSHSSQMLG DQMFNTSGMM QTQQTQIQQS QQQQQQQQQG 180
181 GYGNMQTNQQ SLQPNNMMQN AQQRHQNPQ
|
| Detection Method: | |
| Confidence: | 3.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
