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View Structure Prediction Details

Protein: gi|42569278, gi|...
Organism: Arabidopsis thaliana
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42569278, gi|....

Description E-value Query
Range
Subject
Range
gi|29649475 - gi|29649475|gb|AAO86851.1| hypothetical protein [Arabidopsis thaliana]
438.0 [0..1] [455..1]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFRYRAIDN NRPPPATDTT PSPSLKPNFP FLSERSMPGQ QSEDQVREAI KREIEKEQIR  60
   61 QEIIIAEAAR KRELIAEVLQ EMAIEREMAI RRVSDTEMSL EEKLTMWINQ RKLPNQNQNQ 120
  121 FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA 180
  181 DIIGAKPKAD SVGTMQLPKL QQMPEATGTS VLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNKEQFIVLA RADPVGEKRK AEDIQTGLNE DLQVKRPKAK ESEAKAMSLE TGEIVSSKVP  60
   61 CSGKLGSGKK AEGKLRTNQK FWCEICKVGT YCQIVMRDHE LGKKHKAAVT QQNETPEAAS 120
  121 TSLSPASVTA PQPEAIRVCE NANPQGQKVD EIAAKETTGK KTKGEKKKKE TVWCKTCNIQ 180
  181 TNSEQTMRNH TLGKKHMALL EKQQNKLITV PVRSLNADPG QKESVSLAMD DTQGKVHCLE 240
  241 KS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.09691
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle