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View Structure Prediction Details

Protein: P4H13_ARATH
Organism: Arabidopsis thaliana
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P4H13_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537370 - gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
290.0 [0..10] [273..19]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSYGKEKKL VFPYVFIACC FFLAIFGFCF FNLFSQGISF SEIPTTRRSV NDETDSLDHG  60
   61 SSVSNIPFHG LSWNP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.724 N/A N/A c.23.5 Flavoproteins
View Download 0.694 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.684 N/A N/A c.44.2 Enzyme IIB-cellobiose
View Download 0.671 N/A N/A c.23.5 Flavoproteins
View Download 0.670 N/A N/A d.109.1 Actin depolymerizing proteins

Predicted Domain #2
Region A:
Residues: [76-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVFYLPNFAT KQQCEAVIDM AKPKLKPSTL ALRKGETAET TQNYRSLHQH TDEDESGVLA  60
   61 AIEEKIALAT RFPKDYYESF NILRYQLGQK YDSHYDAFHS AEYGPLISQR VVTFLLFLSS 120
  121 VEEGGETMFP FENGRNMNGR YDYEKCVGLK VKPRQGDAIF FYNLFPNGTI DQTSLHGSCP 180
  181 VIKGEKWVAT KWIRDQTYD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.154902
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle