YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42570847
Organism:	Arabidopsis thaliana
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42570847.

Description	E-value	Query Range	Subject Range
gi\|20515438, gi\|... - gi\|20806959\|ref\|NP_622130.1\| glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806959 - gi\|20806959\|ref\|NP_622130.1\| Glutamate formiminotransferase [Thermoanaerobacter tengcongensis MB4]	429.0	[0..137]	[431..1]
gi\|242256226, gi... - gi\|242256226\|ref\|ZP_04801121.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X513], gi\|242... gi\|114844566, gi... - gi\|167039053\|ref\|YP_001662038.1\| glutamate formiminotransferase [Thermoanaerobacter sp. X514], gi\|16...	427.0	[0..137]	[431..1]
gi\|76797052, gi\|... - gi\|76797052\|ref\|ZP_00779395.1\| Formiminotransferase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|... gi\|241904616, gi... - gi\|241904616\|ref\|ZP_04789298.1\| glutamate formiminotransferase [Thermoanaerobacter brockii subsp. fi...	425.0	[0..137]	[431..1]
gi\|42525812, gi\|... - gi\|42525812\|ref\|NP_970910.1\| formiminotransferase, putative [Treponema denticola ATCC 35405], gi\|418...	417.0	[0..136]	[430..1]
gi\|52218296, gi\|... - gi\|53715431\|ref\|YP_101423.1\| formiminotransferase-cyclodeaminase [Bacteroides fragilis YCH46], gi\|52...	415.0	[0..135]	[431..1]
gi\|60494838, gi\|... - gi\|60683404\|ref\|YP_213548.1\| putative formimidoyltransferase-cyclodeaminase [Bacteroides fragilis NC...	414.0	[0..135]	[431..1]
gi\|29340005, gi\|... - gi\|29348102\|ref\|NP_811605.1\| formiminotransferase-cyclodeaminase [Bacteroides thetaiotaomicron VPI-5... gi\|251841645, gi... - gi\|253569626\|ref\|ZP_04847036.1\| formiminotransferase-cyclodeaminase [Bacteroides sp. 1_1_6], gi\|2518...	413.0	[0..135]	[431..1]
gi\|34396477, gi\|... - gi\|34540165\|ref\|NP_904644.1\| formiminotransferase-cyclodeaminase-related protein [Porphyromonas ging...	411.0	[0..135]	[431..1]
gi\|68431649 - gi\|68431649\|ref\|XP_700749.1\| PREDICTED: similar to Formiminotransferase cyclodeaminase [Danio rerio]	407.0	[0..137]	[431..1]
gi\|158319631, gi... - gi\|158319631\|ref\|YP_001512138.1\| glutamate formiminotransferase [Alkaliphilus oremlandii OhILAs], gi...	407.0	[0..136]	[431..3]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGLNEDFL DCIVRLEETH VQQGFDEGYE EGLVSGREDA RHLGLKLGFE TGELIGFYRG  60
   61 CSALWNSALR IDPTRFSPQL HKHLNDFHVL LDKIPLLDPE DEAKDGIKDD LRVKFSIICA 120
  121 SLGFSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.823909
Match:	PF08215.3
Description:	No description for PF08215.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.957	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.957	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.945	N/A	N/A	a.24.18	Description not found.
View	Download	0.942	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.933	N/A	N/A	f.56.1	Description not found.
View	Download	0.931	N/A	N/A	a.216.1	Description not found.
View	Download	0.931	N/A	N/A	a.160.1	Poly(A) polymerase, middle domain
View	Download	0.866	N/A	N/A	f.1.3	delta-Endotoxin (insectocide), N-terminal domain
View	Download	0.855	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain

Predicted Domain #2

Region A:
Residues: [127-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQFEWSEEML REMLGCCKVY ISEARNKTAL EAIERALKPF PPAAIVNKFE DAAYGRVGYT  60
   61 VVSSLANGSS SSLKNAVFAM VKTALDTINL ELHCGSHPRL GVVDHICFHP LSQTSIEQVS 120
  121 SVANSLAMDI GSILRVPTYL YGAAEKEQCT LDSIRRKLGY FKANREGHEW AGGFDLEMVP 180
  181 LKPDAGPQEV SKAKGVVAVG ACGWVSNYNV PVMSNDLKAV RRIARKTSER GGGLASVQTM 240
  241 ALVHGEGVIE VACNLLNPSQ VGGDEVQGLI ERLGREEGLL VGKGYYTDYT PDQIVERYMD 300
  301 LLNNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1tt9A
Description:	Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits