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View Structure Prediction Details

Protein: MCAC2_ARATH
Organism: Arabidopsis thaliana
Length: 416 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MCAC2_ARATH.

Description E-value Query
Range
Subject
Range
gi|25370624 - gi|25370624|pir||D84556 hypothetical protein At2g17780 [imported] - Arabidopsis thaliana
297.0 [0..1] [416..1]
gi|113547484, gi... - gi|115450825|ref|NP_001049013.1| Os03g0157300 [Oryza sativa (japonica cultivar-group)], gi|113547484...
gi|218192120 - gi|218192120|gb|EEC74547.1| hypothetical protein OsI_10083 [Oryza sativa Indica Group]
296.0 [0..1] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSWDQLGE IASVAQLTGI DALKLIGMIV NAANTARMHK KNCRQFAHHL KLIRNLLEQI  60
   61 KNSEMNQRSE ILEPLQGLDD ALRRSYILVK SCQEKSYLYL LAMGWNIVNQ FEKAQNEIDL 120
  121 FLKIVPLINM ADNARIRERL EAIERDQREY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.988 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.973 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.963 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.949 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.947 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.946 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.946 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.931 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.926 N/A N/A a.25.1 Ferritin-like
View Download 0.912 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.422 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.399 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.358 N/A N/A f.31.1 Photosystem I reaction center subunit XI, PsaL
View Download 0.323 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.314 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Predicted Domain #2
Region A:
Residues: [151-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDEEDRKVQ DVILKQESTR EAATSVLKKT LSRSYPNMGF CEALKTEEEK LQLELQRSRA  60
   61 RYDADQCEVI QRLIDVTQTA ATVEPNLEKV LTKKEELTSS KKRDDLYDTD SSSIRADSRS 120
  121 TSYVSSGHEL LSGRSLQHRG NWHADLLDCC SEPCLCLKTL FFPCGTLAKI STVATSRQIS 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #3
Region A:
Residues: [331-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STEVCKNLIV YSLILSCCCY TCCIRKKLRK TLNITGGCID DFLSHLMCCC CALVQELREV  60
   61 EIHRASYGTE KSNKEMSPPT PQFMEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.816 N/A N/A f.15.1 Small-conductance potassium channel
View Download 0.816 N/A N/A f.15.1 Small-conductance potassium channel
View Download 0.668 N/A N/A a.2.1 GreA transcript cleavage protein, N-terminal domain
View Download 0.602 N/A N/A a.29.13 Description not found.
View Download 0.601 N/A N/A a.7.8 GAT domain
View Download 0.590 N/A N/A a.51.1 Cytochrome c oxidase subunit h
View Download 0.580 N/A N/A a.2.7 tRNA-binding arm
View Download 0.450 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.450 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.435 N/A N/A a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.403 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.325 N/A N/A a.7.8 GAT domain
View Download 0.222 N/A N/A a.7.8 GAT domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle