YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1177238
Organism:	Ascaris lumbricoides
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1177238.

Description	E-value	Query Range	Subject Range
gi\|74004215 - gi\|74004215\|ref\|XP_853963.1\| PREDICTED: similar to germinal histone H4 gene [Canis familiaris]	165.0	[0..18]	[103..390]
gi\|76631272 - gi\|76631272\|ref\|XP_608100.2\| PREDICTED: similar to germinal histone H4 gene [Bos taurus]	161.0	[0..18]	[103..231]
gi\|94378251 - gi\|94378251\|ref\|XP_981474.1\| PREDICTED: similar to histone H4 [Mus musculus]	155.0	[0..18]	[103..73]
gi\|47225212 - gi\|47225212\|emb\|CAF98839.1\| unnamed protein product [Tetraodon nigroviridis]	154.0	[0..1]	[103..132]
gi\|50728590 - gi\|50728590\|ref\|XP_416192.1\| PREDICTED: similar to germinal histone H4 gene [Gallus gallus]	153.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRSVLK  60
   61 VFLENVIRDA VTYCEHAKRK TVTAMDVVYA LKHQGRTLYG FGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1eqzD
Description:	Histone H4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits