YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51247242, gi\|...
Organism:	Homo sapiens
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51247242, gi|....

Description	E-value	Query Range	Subject Range
gi\|109066195 - gi\|109066195\|ref\|XP_001108503.1\| PREDICTED: similar to adaptor protein with pleckstrin homology and ...	114.0	[0..6]	[69..22]
SH2B2 - SH2B adaptor protein 2	113.0	[0..6]	[69..22]
gi\|76653929 - gi\|76653929\|ref\|XP_875258.1\| PREDICTED: similar to adaptor protein with pleckstrin homology and src ...	113.0	[0..6]	[69..241]
gi\|73957798 - gi\|73957798\|ref\|XP_546938.2\| PREDICTED: similar to adaptor protein with pleckstrin homology and src ...	111.0	[0..4]	[66..18]
SH2B2_RAT - SH2B adapter protein 2 OS=Rattus norvegicus GN=Sh2b2 PE=1 SV=1	109.0	[0..4]	[66..15]
gi\|11292017 - gi\|11292017\|pir\|\|JC7278 adaptor protein containing PH and SH2 domains - mouse	106.0	[0..6]	[67..17]
gi\|114617995 - gi\|114617995\|ref\|XP_519282.2\| PREDICTED: SH2B adaptor protein 2, partial [Pan troglodytes]	106.0	[0..6]	[69..20]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMPDWRQF CELHAQAAAV DFAHKFCRFL RDNPAYDTPD AGASFSRHFA ANFLDVFGEE  60
   61 VRRVLVAGP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1q2hA
Description:	Phenylalanine Zipper Mediates APS Dimerization
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits