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View Structure Prediction Details

Protein: gi|55670893, gi|...
Organism: Arabidopsis thaliana
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670893, gi|....

Description E-value Query
Range
Subject
Range
SPD1_ARATH - Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1
314.0 [0..2] [334..2]
SPD1_PEA - Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1
293.0 [0..2] [334..6]
SPDE_COFAR - Spermidine synthase OS=Coffea arabica PE=2 SV=1
286.0 [0..22] [334..2]
gi|86438862 - gi|86438862|emb|CAJ46252.1| putrescine N-methyltransferase [Calystegia sepium]
284.0 [0..1] [330..12]
gi|49425361 - gi|49425361|gb|AAT66041.1| spermidine synthase [Cucumis sativus]
281.0 [0..37] [332..21]
gi|23495352 - gi|23495352|dbj|BAC20170.1| spermidine synthase [Malus x domestica]
280.0 [0..5] [333..8]
gi|50251663, gi|... - gi|50252211|dbj|BAD28219.1| putative aminopropyl transferase [Oryza sativa Japonica Group], gi|50251...
280.0 [0..27] [331..45]

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Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDAKETSATD LKRPREEDDN GGAATXETEN GDQKKEPACF STVIPGWFSE XSPXWPGEAH  60
   61 SLKVEKVLFQ GKSDYQDVIV FQSATYGKVL VLDGVIQLTE RDECAYQEXI THLPLCSIPN 120
  121 PKKVLVIGGG DGGVLREVAR HASIEQIDXC EIDKXVVDVS KQFFPDVAIG YEDPRVNLVI 180
  181 GDGVAFLKNA AEGSYDAVIV DSSDPIGPAK ELFEKPFFQS VARALRPGGV VCTQAESLWL 240
  241 HXDIIEDIVS NCREIFKGSV NYAWTSVPTY PSGVIGFXLC STEGPDVDFK HPLNPIDESS 300
  301 SKSNGPLKFY NAEIHSAAFC LPSFAKKVIE SKAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.154902
Match: 1xj5A
Description: X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle