YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|159163226, gi...
Organism:	Homo sapiens
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|159163226, gi....

Description	E-value	Query Range	Subject Range
gi\|109464704 - gi\|109464704\|ref\|XP_342224.2\| PREDICTED: similar to Protein kinase C iota type (nPKC-iota) (Atypical...	183.0	[0..1]	[89..321]
gi\|74188703 - gi\|74188703\|dbj\|BAE28088.1\| unnamed protein product [Mus musculus]	182.0	[0..1]	[89..82]
gi\|74003739 - gi\|74003739\|ref\|XP_535855.2\| PREDICTED: similar to Protein kinase C, iota type (nPKC-iota) (Atypical...	181.0	[0..1]	[89..120]
gi\|76607727 - gi\|76607727\|ref\|XP_606901.2\| PREDICTED: similar to Protein kinase C, iota type (nPKC-iota) (Atypical...	179.0	[0..1]	[89..20]
gi\|71051545 - gi\|71051545\|gb\|AAH22016.2\| PRKCI protein [Homo sapiens]	179.0	[0..1]	[89..20]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLGSQVRVK AYYRGDIMIT HFEPSISFEG LCNEVRDMCS FDNEQLFTMK WIDEEGDPCT  60
   61 VSSQLELEEA FRLYELNKDS ELLIHVFPC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	1vd2A
Description:	Solution Structure of the PB1 domain of PKCiota
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits