YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670407, gi\|...
Organism:	Pyrococcus horikoshii
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670407, gi|....

Description	E-value	Query Range	Subject Range
RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi GN=rnp1 PE=3 SV=1 RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp1 PE=3 SV=1	132.0	[0..1]	[96..32]
RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii GN=rnp1 PE=1 SV=1 RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	131.0	[0..1]	[96..32]
gi\|73948573 - gi\|73948573\|ref\|XP_855541.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Canis...	127.0	[0..6]	[94..211]
gi\|50753751 - gi\|50753751\|ref\|XP_414118.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Gallu...	124.0	[0..6]	[94..688]
RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus GN=rnp1 PE=1 SV=1 RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	124.0	[0..1]	[95..32]
gi\|114676456 - gi\|114676456\|ref\|XP_001149225.1\| PREDICTED: similar to Pop4 protein isoform 5 [Pan troglodytes]	121.0	[0..6]	[94..153]
RPP29_BOVIN - Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1	120.0	[0..6]	[94..124]
gi\|109124170 - gi\|109124170\|ref\|XP_001084400.1\| PREDICTED: processing of precursor 4, ribonuclease P/MRP subunit (S...	120.0	[0..6]	[94..125]
RP29_PONPY, RPP2... - Ribonuclease P protein subunit p29 - Pongo pygmaeus (Orangutan), (Q5R7B0) Ribonuclease P protein sub... RPP29_PONAB - Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1	120.0	[0..6]	[94..124]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAHRGRVTRR NIIWHELIGL RVRIVGSTHP AFVGIEGYVI DETRNMLVIA GDRIWKVPKD  60
   61 VSIFEFEADD GTKIKIPGER LVGRPEMRLK KRWKKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1v76A
Description:	Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits