YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670089
Organism:	Escherichia coli
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670089.

Description	E-value	Query Range	Subject Range
gi\|38325815 - gi\|38325815\|gb\|AAR17080.1\| heat shock protein 70-3 [Nicotiana tabacum]	286.0	[0..1]	[226..400]
gi\|3004463 - gi\|3004463\|emb\|CAA04673.1\| heat shock protein 70 [Oreochromis mossambicus]	285.0	[0..1]	[227..395]
gi\|45331285 - gi\|45331285\|gb\|AAS57914.1\| 70 kDa heat shock cognate protein 3 [Vigna radiata]	284.0	[0..1]	[227..399]
gi\|254690260 - gi\|254690260\|ref\|ZP_05153514.1\| molecular chaperone DnaK [Brucella abortus bv. 6 str. 870] gi\|254694747 - gi\|254694747\|ref\|ZP_05156575.1\| molecular chaperone DnaK [Brucella abortus bv. 3 str. Tulya] DNAK_BRUAB - Chaperone protein DnaK OS=Brucella abortus biovar 1 (strain 9-941) GN=dnaK PE=3 SV=1 gi\|82700876 - gi\|82700876\|ref\|YP_415450.1\| molecular chaperone DnaK [Brucella melitensis biovar Abortus 2308] gi\|225641917, gi... - gi\|225853552\|ref\|YP_002733785.1\| chaperone protein DnaK [Brucella melitensis ATCC 23457], gi\|2256419... DNAK_BRUO2 - Chaperone protein DnaK OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dnaK PE=2 SV=2 gi\|254709102 - gi\|254709102\|ref\|ZP_05170913.1\| molecular chaperone DnaK [Brucella pinnipedialis B2/94] DNAK_BRUAB - Chaperone protein dnaK OS=Brucella abortus GN=dnaK PE=2 SV=1 gi\|254713473 - gi\|254713473\|ref\|ZP_05175284.1\| molecular chaperone DnaK [Brucella ceti M644/93/1] gi\|254696376 - gi\|254696376\|ref\|ZP_05158204.1\| molecular chaperone DnaK [Brucella abortus bv. 2 str. 86/8/59] gi\|254707356 - gi\|254707356\|ref\|ZP_05169184.1\| molecular chaperone DnaK [Brucella pinnipedialis M163/99/10] gi\|254731290 - gi\|254731290\|ref\|ZP_05189868.1\| molecular chaperone DnaK [Brucella abortus bv. 4 str. 292] gi\|254716172 - gi\|254716172\|ref\|ZP_05177983.1\| molecular chaperone DnaK [Brucella ceti M13/05/1] gi\|254718168 - gi\|254718168\|ref\|ZP_05179979.1\| molecular chaperone DnaK [Brucella sp. 83/13] gi\|163674864, gi... - gi\|163844141\|ref\|YP_001628546.1\| molecular chaperone DnaK [Brucella suis ATCC 23445], gi\|163674864\|g... gi\|189025179, gi... - gi\|189025179\|ref\|YP_001935947.1\| Heat shock protein Hsp70 [Brucella abortus S19], gi\|189020751\|gb\|AC...	283.0	[0..1]	[212..387]
DNAK_BRUME - Chaperone protein dnaK OS=Brucella melitensis GN=dnaK PE=2 SV=2 DNAK_BRUME - Chaperone protein DnaK OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=dn...	282.0	[0..1]	[212..387]
gi\|109689150 - gi\|109689150\|emb\|CAK95236.1\| 71kDa heat shock protein [Haliotis tuberculata]	282.0	[0..1]	[220..394]
gi\|17984056, gi\|... - gi\|17988285\|ref\|NP_540919.1\| molecular chaperone DnaK [Brucella melitensis 16M], gi\|17984056\|gb\|AAL5... gi\|25295979 - gi\|25295979\|pir\|\|AD3502 dnaK protein [imported] - Brucella melitensis (strain 16M)	282.0	[0..1]	[212..391]
gi\|2660770, gi\|1... - gi\|2660770\|gb\|AAB88133.1\| cytosolic heat shock 70 protein [Spinacia oleracea], gi\|2660768\|gb\|AAB8813...	282.0	[0..1]	[227..400]
DNAK_CHESB - Chaperone protein DnaK OS=Chelativorans sp. (strain BNC1) GN=dnaK PE=3 SV=1	282.0	[0..1]	[226..387]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIPLSLGL ETMGGLVEKV IPRNTTIPVA RAQDFTTFKD GQTAMSIHVM QGERELVQDC  60
   61 RSLARFALRG IPALPAGGAH IRVTFQVDAD GLLSVTAMEK STGVEASIQV KPSYGLTDSE 120
  121 IASMIKDSMS YAEQDVKARM LAEQKVEAAR VLESLHGALA ADAALLSAAE RQVIDDAAAH 180
  181 LSEVAQGDDV DAIEQAIKNV DKQTQDFAAR RMDQSVRRAL KGHSVDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1u00A
Description:	HscA substrate binding domain complexed with the IscU recognition peptide ELPPVKIHC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits