YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55669749, gi\|...
Organism:	Homo sapiens
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55669749, gi|....

Description	E-value	Query Range	Subject Range
gi\|55852768 - gi\|55852768\|gb\|AAV67804.1\| modified Homo sapiens anti-Pseudomonas aeruginosa IgG1 O6ad heavy chain [...	213.0	[0..3]	[118..31]
gi\|2765425 - gi\|2765425\|emb\|CAA75032.1\| immunoglobulin lambda heavy chain [Homo sapiens]	210.0	[0..3]	[118..23]
gi\|2392371, gi\|2... - gi\|2392373\|pdb\|1IGT\|D Chain D, Structure Of Immunoglobulin, gi\|2392371\|pdb\|1IGT\|B Chain B, Structure...	209.0	[0..3]	[118..4]
gi\|2143192 - gi\|2143192\|emb\|CAA73702.1\| immunoglobulin heavy chain [Acipenser baerii]	203.0	[0..2]	[116..22]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATKLTEEKYE LKEGQTLDVK CDYTLEKFAS SQKAWQIIRD GEMPKTLACT ERPSKNSHPV  60
   61 QVGRIILEDY HDHGLLRVRM VNLQVEDSGL YQCVIYQPPK EPHMLFDRIR LVVTKGFSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	1igtB
Description:	Immunoglobulin heavy chain variable domain, VH; Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma; Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma; Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: