YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55669748
Organism:	Homo sapiens
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55669748.

Description	E-value	Query Range	Subject Range
gi\|109474859, gi... - gi\|109476415\|ref\|XP_001070635.1\| PREDICTED: similar to GLI pathogenesis-related 2 [Rattus norvegicus...	156.0	[0..3]	[154..81]
gi\|94373249 - gi\|94373249\|ref\|XP_979011.1\| PREDICTED: similar to GLI pathogenesis-related 2 [Mus musculus]	153.0	[0..1]	[154..70]
gi\|115945892, gi... - gi\|115945892\|ref\|XP_001186832.1\| PREDICTED: similar to MGC139179 protein [Strongylocentrotus purpura...	153.0	[0..3]	[153..833]
gi\|114624650 - gi\|114624650\|ref\|XP_001159058.1\| PREDICTED: similar to 17kD protein [Pan troglodytes]	153.0	[0..6]	[154..119]
gi\|109111012 - gi\|109111012\|ref\|XP_001082438.1\| PREDICTED: similar to chromosome 9 open reading frame 19 [Macaca mu...	148.0	[0..1]	[154..1]
gi\|111307081, gi... - gi\|61812939\|ref\|XP_581156.1\| PREDICTED: similar to chromosome 9 open reading frame 19 isoform 1 [Bos...	148.0	[0..1]	[154..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSASKQFH NEVLKAHNEY RQKHGVPPLK LXKNLNREAQ QYSEALASTR ILKHSPESSR  60
   61 GQXGENLAWA SYDQTGKEVA DRWYSEIKNY NFQQPGFTSG TGHFTAMVWK NTKKMGVGKA 120
  121 SASDGSSFVV ARYFPAGNVV NEGFFEENVL PPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1smbA
Description:	Crystal Structure of Golgi-Associated PR-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits