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View Structure Prediction Details

Protein: nhr-91
Organism: Caenorhabditis elegans
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-91.

Description E-value Query
Range
Subject
Range
gi|74006090 - gi|74006090|ref|XP_859507.1| PREDICTED: similar to Retinoic acid receptor RXR-gamma (Retinoid X rece...
233.0 [0..1] [310..255]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEAVREDR MPGGRNGNSI YSNYKQRRSI IRKTKDYVEE QERRPFQSLP SGKKLIKELV  60
   61 EMDCLDRLIN LKGLRINPSA NCDIAPACKR LTRIGDEIVE QLVEWTKTLP FFDELPVEAH 120
  121 THLLTQRWAE LVLLSAGYYA CSVFTPDSPD TTEMIDETDE ISFTNPQVNL RLLQNRLSLV 180
  181 LGKEIPLEHV AKEAGPLVTR FTTLLHSFSN LKVSPEAYVC IKAITLLHLS ADSTLDRSII 240
  241 DKVNTLQDHF VKTLQIHLHQ PGEDAQTTSL AQILDWLPDL RNASSVLLHS KMFYVPFLLC 300
  301 KNPRRLVFDE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.221849
Match: 1z5xU
Description: hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle