YRC Public Data Repository - Protein Structure Prediction

Protein:	SEPW1_PIG
Organism:	Sus scrofa
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEPW1_PIG.

Description	E-value	Query Range	Subject Range
gi\|13473369, gi\|... - gi\|14024118\|dbj\|BAB50722.1\| mll3944 [Mesorhizobium loti MAFF303099], gi\|13473369\|ref\|NP_104936.1\| hy...	146.0	[0..3]	[87..14]
gi\|86355902, gi\|... - gi\|86355902\|ref\|YP_467794.1\| hypothetical protein RHE_CH00244 [Rhizobium etli CFN 42], gi\|86280004\|g...	146.0	[0..4]	[87..6]
gi\|15073194 - gi\|15073194\|emb\|CAC41702.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964018 - gi\|15964018\|ref\|NP_384371.1\| hypothetical protein SMc00345 [Sinorhizobium meliloti 1021]	145.0	[0..3]	[87..5]
gi\|113871296, gi... - gi\|150398651\|ref\|YP_001329118.1\| putative selenoprotein [Sinorhizobium medicae WSM419], gi\|150030166...	145.0	[0..3]	[87..5]
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	145.0	[0..3]	[87..6]
gi\|90335205, gi\|... - gi\|90420477\|ref\|ZP_01228384.1\| possible selenoprotein, W-related family [Aurantimonas sp. SI85-9A1],... gi\|90335205, gi\|... - gi\|90420477\|ref\|ZP_01228384.1\| possible selenoprotein, W-related family [Aurantimonas sp. SI85-9A1],...	144.0	[0..2]	[87..7]
gi\|90326185, gi\|... - gi\|90412826\|ref\|ZP_01220826.1\| uncharacterized protein conserved in bacteria [Photobacterium profund...	144.0	[0..4]	[87..5]
gi\|95111902 - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent... gi\|104782915, gi... - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent...	143.0	[0..3]	[87..6]
gi\|17934144, gi\|... - gi\|17934144\|ref\|NP_530934.1\| hypothetical protein Atu0228 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25378705, gi\|... - pir\|\|AD2604 conserved hypothetical protein Atu0228 [imported] - Agrobacterium tumefaciens (strain C5...	143.0	[0..3]	[87..6]
gi\|24986246, gi\|... - gi\|26991198\|ref\|NP_746623.1\| hypothetical protein PP_4513 [Pseudomonas putida KT2440], gi\|24986246\|g...	143.0	[0..3]	[87..6]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVAVRVVYC GACGYKSKYL QLKKKLEDEF PGRLDICGEG TPQVTGFFEV LVAGKLVHSK  60
   61 KGGDGYVDTE SKFLKLVAAI KAALAQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2npbA
Description:	No description for 2npbA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits