YRC Public Data Repository - Protein Structure Prediction

Protein:	WOX2_ARATH
Organism:	Arabidopsis thaliana
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WOX2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|37909278 - gi\|37909278\|gb\|AAP37131.1\| WOX2 protein [Arabidopsis thaliana]	157.0	[0..1]	[260..1]
gi\|76666860 - gi\|76666860\|ref\|XP_876649.1\| PREDICTED: similar to Paired box protein Pax-3 (HUP2) isoform 3 [Bos ta...	119.0	[0..5]	[256..253]
gi\|47219179 - gi\|47219179\|emb\|CAG01842.1\| unnamed protein product [Tetraodon nigroviridis]	119.0	[0..4]	[260..115]
gi\|15823130 - gi\|15823130\|dbj\|BAB68716.1\| homeobox protein [Mus musculus musculus] tr\|Q920T7\|Q920T7... - tr\|Q920T7\|Q920T7_MOUSE Homeobox protein (Fragment) OS=Mus musculus GN=Hoxa2 PE=2 SV=1, Homeobox prot...	118.0	[0..4]	[250..7]
gi\|15823132 - gi\|15823132\|dbj\|BAB68717.1\| homeobox protein [Mus spicilegus] gi\|15823120, gi\|... - gi\|15823128\|dbj\|BAB68715.1\| homeobox protein [Mus musculus], gi\|15823126\|dbj\|BAB68714.1\| homeobox pr... gi\|15823118 - gi\|15823118\|dbj\|BAB68710.1\| homeobox protein [Mus musculus musculus]	117.0	[0..4]	[250..7]
gi\|560583 - gi\|560583\|gb\|AAB30807.1\| PAX7-FKHR=chimeric transcription factor(FKHR, PAX7) {translocation} [human,...	113.0	[0..5]	[205..185]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA YGHIEGKNVF  60
   61 YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN VGCVSPYYLQ QASDHHMNQH 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2cueA
Description:	Solution structure of the homeobox domain of the human paired box protein Pax-6
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ KQLSDIRTTA ATRMPISPSS LRFDRFALRD  60
   61 NCYAGEDINV NSSGRKTLPL FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF 120
  121 IDFFSGGSTS TRFDSNGNGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	3dzuA
Description:	No description for 3dzuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits