YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9022433, gi\|1...
Organism:	Chlamydomonas reinhardtii
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9022433, gi|1....

Description	E-value	Query Range	Subject Range
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	92.0	[0..16]	[81..24]
gi\|50254965, gi\|... - gi\|50254965\|gb\|EAL17705.1\| hypothetical protein CNBL2200 [Cryptococcus neoformans var. neoformans B-... gi\|58270476, gi\|... - gi\|58270476\|ref\|XP_572394.1\| hypothetical protein CNH02200 [Cryptococcus neoformans var. neoformans ...	92.0	[0..5]	[81..6]
gi\|47497218, gi\|... - gi\|50915562\|ref\|XP_468245.1\| putative copper chaperone COX17-1 [Oryza sativa (japonica cultivar-grou... gi\|218191738 - gi\|218191738\|gb\|EEC74165.1\| hypothetical protein OsI_09266 [Oryza sativa Indica Group]	90.0	[0..1]	[81..1]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	90.0	[0..10]	[81..22]
gi\|49095078, gi\|... - gi\|67537386\|ref\|XP_662467.1\| hypothetical protein AN4863.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	87.0	[0..4]	[81..22]
gi\|55661839, gi\|... - gi\|55661839\|emb\|CAH71087.1\| OTTHUMP00000018371 [Homo sapiens], gi\|119629170\|gb\|EAX08765.1\| hCG202026...	86.0	[0..17]	[81..1]
gi\|49647809, gi\|... - gi\|50548943\|ref\|XP_501942.1\| hypothetical protein [Yarrowia lipolytica], gi\|49647809\|emb\|CAG82262.1\|...	86.0	[0..15]	[81..3]
gi\|114649557 - gi\|114649557\|ref\|XP_001149835.1\| PREDICTED: similar to COX17 [Pan troglodytes]	85.0	[0..17]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASGSKPEG AGPGPALPTP SPAPPGVPIG PDGKPKKICC SCPDTKKLRD TCIAERGEEH  60
   61 AYCQALIEAH KACLRVEGFK V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2rn9A
Description:	No description for 2rn9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits