YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157878724, gi...
Organism:	Homo sapiens
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157878724, gi....

Description	E-value	Query Range	Subject Range
gi\|114639587 - gi\|114639587\|ref\|XP_001175212.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	111.0	[0..2]	[88..524]
gi\|51491229 - gi\|51491229\|emb\|CAH18680.1\| hypothetical protein [Homo sapiens]	111.0	[0..2]	[88..524]
gi\|76659146 - gi\|76659146\|ref\|XP_595609.2\| PREDICTED: similar to synapse-associated protein 102 [Bos taurus]	111.0	[0..2]	[88..636]
gi\|73988029 - gi\|73988029\|ref\|XP_542276.2\| PREDICTED: similar to Channel associated protein of synapse-110 (Chapsy...	110.0	[0..2]	[88..450]
DLG2_DANRE - Disks large homolog 2 OS=Danio rerio GN=dlg2 PE=2 SV=1	110.0	[0..2]	[88..422]
gi\|148682220, gi... - gi\|28972680\|dbj\|BAC65756.1\| mKIAA1232 protein [Mus musculus], gi\|148682220\|gb\|EDL14167.1\| discs, lar...	110.0	[0..2]	[88..517]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSRLVQFQKN TDEPMGITLK MNELNHCIVA RIMHGGMIHR QGTLHVGDEI REINGISVAN  60
   61 QTVEQLQKML REMRGSITFK IVPSYREF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1kwaA
Description:	Cask/Lin-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.566291652083235	bayes_pls_golite062009
protein binding	0.52823753548825	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: