YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24987642
Organism:	Escherichia coli
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24987642.

Description	E-value	Query Range	Subject Range
gi\|84390277, gi\|... - gi\|84501656\|ref\|ZP_00999828.1\| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597], g...	297.0	[0..1]	[257..143]
gi\|114315948, gi... - gi\|114327774\|ref\|YP_744931.1\| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1], gi\|11...	295.0	[0..1]	[257..146]
gi\|86283151, gi\|... - gi\|86359049\|ref\|YP_470941.1\| cell division metalloproteinase protein [Rhizobium etli CFN 42], gi\|862...	295.0	[0..1]	[257..147]
gi\|99038481, gi\|... - gi\|99082201\|ref\|YP_614355.1\| ATP-dependent metalloprotease FtsH [Silicibacter sp. TM1040], gi\|990384...	295.0	[0..1]	[257..143]
gi\|114541944, gi... - gi\|114765727\|ref\|ZP_01444825.1\| ATP-dependent metalloprotease FtsH [Roseovarius sp. HTCC2601], gi\|11...	294.0	[0..1]	[257..143]
gi\|56679674, gi\|... - gi\|56697937\|ref\|YP_168308.1\| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3], gi\|566796...	294.0	[0..1]	[257..145]
gi\|115258353, gi... - gi\|116253705\|ref\|YP_769543.1\| putative cell division protein FtsH [Rhizobium leguminosarum bv. vicia...	293.0	[0..1]	[257..147]
gi\|15891238, gi\|... - gi\|15891238\|ref\|NP_356910.1\| hypothetical protein AGR_L_2253 [Agrobacterium tumefaciens str. C58], g... gi\|25308068 - pir\|\|E98271 metalloproteinase ftsH (AJ243808) [imported] - Agrobacterium tumefaciens (strain C58, Ce...	293.0	[0..1]	[257..161]
gi\|83950084, gi\|... - gi\|83950084\|ref\|ZP_00958817.1\| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM], gi\|...	293.0	[0..1]	[257..143]
gi\|86139142, gi\|... - gi\|86139142\|ref\|ZP_01057712.1\| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193], gi\|85823...	292.0	[0..1]	[257..143]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEDQIKTT FADVAGCDEA KEEVAELVEY LREPSRFQKL GGKIPKGVLM VGPPGTGKTL  60
   61 LAKAIAGEAK VPFFTISGSD FVEMFVGVGA SRVRDMFEQA KKAAPCIIFI DEIDAVGRQR 120
  121 GAGLGGGHDE REQTLNQMLV EMDGFEGNEG IIVIAATNRP DVLDPALLRP GRFDRQVVVG 180
  181 LPDVRGREQI LKVHMRRVPL APDIDAAIIA RGTPGFSGAD LANLVNEAAL FAARGNKRVV 240
  241 SMVEFEKAKD KIMMGLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1lv7A
Description:	AAA domain of cell division protein FtsH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: