YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24158663, gi\|...
Organism:	Homo sapiens
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24158663, gi|....

Description	E-value	Query Range	Subject Range
gi\|71897375, gi\|... - gi\|71897375\|ref\|NP_001026065.1\| TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated f...	139.0	[0..2]	[76..54]
gi\|165971408, gi... - gi\|169234842\|ref\|NP_001108508.1\| TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated ...	139.0	[0..2]	[76..54]
gi\|187607294, gi... - gi\|187607294\|ref\|NP_001120359.1\| hypothetical protein LOC100145432 [Xenopus (Silurana) tropicalis], ... gi\|156230044, gi... - gi\|41351070\|gb\|AAH65878.1\| TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor...	139.0	[0..5]	[76..58]
gi\|12841601 - gi\|12841601\|dbj\|BAB25276.1\| unnamed protein product [Mus musculus]	138.0	[0..2]	[76..54]
TAF12_BOVIN - Transcription initiation factor TFIID subunit 12 OS=Bos taurus GN=TAF12 PE=2 SV=1	138.0	[0..2]	[76..54]
gi\|123994127, gi... - gi\|61360319\|gb\|AAX41843.1\| TAF12 RNA polymerase II TATA box binding protein-associated factor [synth... TAF12 - TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa	138.0	[0..2]	[76..54]
tr\|M3WQ01\|M3WQ01... - TATA-box binding protein associated factor 12 OS=Felis catus GN=TAF12 PE=4 SV=1 ENSCJAT00000018889 - null gi\|109000147, gi... - gi\|109000150\|ref\|XP_001113189.1\| PREDICTED: TAF12 RNA polymerase II, TATA box binding protein (TBP)-... tr\|G3H1Y6\|G3H1Y6... - Transcription initiation factor TFIID subunit 12 OS=Cricetulus griseus GN=I79_004179 PE=4 SV=1 gi\|114555130, gi... - gi\|114555130\|ref\|XP_513257.2\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114555... gi\|73950083, gi\|... - gi\|73966013\|ref\|XP_851093.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 12 ... CCDS326.1_1 - null	138.0	[0..2]	[76..54]
gi\|61370125, gi\|... - gi\|61370130\|gb\|AAX43442.1\| TAF12 RNA polymerase II TATA box binding protein-associated factor [synth...	138.0	[0..2]	[76..54]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHXVLTKKK LQDLVREVDP NEQLDEDVEE XLLQIADDFI ESVVTAACQL ARHRKSSTLE  60
   61 VKDVQLHLER QWNXWI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1h3oB
Description:	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: