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View Structure Prediction Details

Protein: gi|132847
Organism: Saccharomyces cerevisiae
Length: 149 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|132847.

Description E-value Query
Range		 Subject
Range
gi|67525973, gi|... - gi|67525973|ref|XP_661048.1| hypothetical protein AN3444.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
 203.0 [0..1] [149..846]
gi|109065734 - gi|109065734|ref|XP_001106319.1| PREDICTED: similar to ribosomal protein L27a [Macaca mulatta]
 178.0 [0..1] [149..1]
RL27A_BOVIN - 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3
gi|73988818, gi|... - gi|73992191|ref|XP_866978.1| PREDICTED: similar to ribosomal protein L27a isoform 2 [Canis familiari...
gi|149720018 - gi|149720018|ref|XP_001504953.1| PREDICTED: similar to ribosomal protein L27a-like [Equus caballus]
tr|G3I3W6|G3I3W6... - 60S ribosomal protein L27a OS=Cricetulus griseus GN=H671_3g11227 PE=3 SV=1
ENSCJAT00000022853 - null
 177.0 [0..1] [149..1]
RL27A_MOUSE - 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5
 177.0 [0..1] [149..1]
gi|57696 - gi|57696|emb|CAA36947.1| unnamed protein product [Rattus rattus]
RL27A_RAT - 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3
 177.0 [0..1] [149..1]
gi|83638540 - gi|83638540|gb|AAI09684.1| Ribosomal protein L27a [Bos taurus]
 176.0 [0..1] [149..1]
ENSPTRT00000006317 - null
RL27A_PONAB - 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3
RL27A_PONPY - 60S ribosomal protein L27a - Pongo pygmaeus (Orangutan)
RPL27A - ribosomal protein L27a
 176.0 [0..1] [149..1]

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Predicted Domain #1
Region A:
Residues: [1-149] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRFTKTRK HRGHVSAGKG RIGKHRKHPG GRGMAGGEHH HRINMDKYHP GYFGKVGMRY  60
   61 FHKQQAHFWK PVLNLDKLWT LIPEDKRDQY LKSASKETAP VIDTLAAGYG KILGKGRIPN 120
  121 VPVIVKARFV SKLAEEKIRA AGGVVELIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 1s1iV
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle