YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6435612
Organism:	Mus musculus
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6435612.

Description	E-value	Query Range	Subject Range
gi\|60810097 - gi\|60810097\|gb\|AAX36104.1\| ornithine decarboxylase 1 [synthetic construct]	412.0	[0..1]	[422..1]
ODC1 - ornithine decarboxylase 1 gi\|123998958, gi... - gi\|190690881\|gb\|ACE87215.1\| ornithine decarboxylase 1 protein [synthetic construct], gi\|157929112\|gb...	412.0	[0..1]	[422..1]
DCOR_MUSPA - Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1	411.0	[0..1]	[424..1]
gi\|23273123 - gi\|23273123\|gb\|AAH33264.1\| Odc1 protein [Mus musculus]	411.0	[0..1]	[424..1]
DCOR_BOVIN - Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1	410.0	[0..1]	[422..1]
gi\|73979741, gi\|... - gi\|73979741\|ref\|XP_856711.1\| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 9 [Canis fa...	409.0	[0..1]	[423..1]
gi\|109101988, gi... - gi\|109101994\|ref\|XP_001086721.1\| PREDICTED: ornithine decarboxylase 1 isoform 5 [Macaca mulatta], gi...	409.0	[0..1]	[422..1]
DCOR_RAT - Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1	409.0	[0..1]	[424..1]

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Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFTKDEFD CHILDEGFTA KDILDQKINE VSSSDDKDAF YVADLGDILK KHLRWLKALP  60
   61 RVTPFYAVKC NDSRAIVSTL AAIGTGFDCA SKTEIQLVQG LGVPAERVIY ANPCKQVSQI 120
  121 KYAASNGVQM MTFDSEIELM KVARAHPKAK LVLRIATDDS KAVCRLSVKF GATLKTSRLL 180
  181 LERAKELNID VIGVSFHVGS GCTDPDTFVQ AVSDARCVFD MATEVGFSMH LLDIGGGFPG 240
  241 SEDTKLKFEE ITSVINPALD KYFPSDSGVR IIAEPGRYYV ASAFTLAVNI IAKKTVWKEQ 300
  301 PGSDDEDESN EQTFMYYVND GVYGSFNCIL YDHAHVKALL QKRPKPDEKY YSSSIWGPTC 360
  361 DGLDRIVERC NLPEMHVGDW MLFENMGAYT VAAASTFNGF QRPNIYYVMS RPMWQLMKQI 420
  421 QSHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	2oo0A
Description:	No description for 2oo0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits