YRC Public Data Repository - Protein Structure Prediction

Protein:	RL17_GEOSE
Organism:	Geobacillus stearothermophilus
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL17_GEOSE.

Description	E-value	Query Range	Subject Range
RL17_BACLD - 50S ribosomal protein L17 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	179.0	[0..1]	[120..1]
RL17_BACSK - 50S ribosomal protein L17 OS=Bacillus clausii (strain KSM-K16) GN=rplQ PE=3 SV=1	179.0	[0..1]	[120..1]
gi\|220706776, gi... - gi\|221089350\|ref\|ZP_03558870.1\| ribosomal protein L17 [Geobacillus sp. Y412MC61], gi\|220706776\|gb\|EE... gi\|229500503, gi... - gi\|229500503\|ref\|ZP_04394164.1\| ribosomal protein L17 [Geobacillus sp. Y412MC52], gi\|229328620\|gb\|EE... RL17_GEOKA - 50S ribosomal protein L17 OS=Geobacillus kaustophilus GN=rplQ PE=3 SV=1 RL17_GEOKA - 50S ribosomal protein L17 OS=Geobacillus kaustophilus (strain HTA426) GN=rplQ PE=3 SV=1	178.0	[0..1]	[120..1]
gi\|89084940, gi\|... - gi\|89100319\|ref\|ZP_01173184.1\| 50S ribosomal protein L17 [Bacillus sp. NRRL B-14911], gi\|89084940\|gb...	176.0	[0..1]	[120..1]
RL17_RHORT - 50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	176.0	[0..1]	[120..5]
gi\|221312278 - gi\|221312278\|ref\|ZP_03594083.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. NC... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis (strain 168) GN=rplQ PE=1 SV=2 gi\|221317212 - gi\|221317212\|ref\|ZP_03598506.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. JH... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis GN=rplQ PE=3 SV=2 gi\|221321475 - gi\|221321475\|ref\|ZP_03602769.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. SM...	176.0	[0..1]	[120..1]
RL17_BACHD - 50S ribosomal protein L17 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL17_BACHD - 50S ribosomal protein L17 OS=Bacillus halodurans GN=rplQ PE=3 SV=2	175.0	[0..1]	[120..1]
RL17_GEOMG - 50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpl...	172.0	[0..2]	[120..6]
gi\|228708969, gi... - gi\|229074199\|ref\|ZP_04207245.1\| 50S ribosomal protein L17 [Bacillus cereus Rock4-18], gi\|228708969\|g... gi\|228705871, gi... - gi\|229077438\|ref\|ZP_04210088.1\| 50S ribosomal protein L17 [Bacillus cereus Rock4-2], gi\|228705871\|gb... gi\|228694108, gi... - gi\|229089269\|ref\|ZP_04220550.1\| 50S ribosomal protein L17 [Bacillus cereus Rock3-42], gi\|228694108\|g... gi\|228688603, gi... - gi\|229094860\|ref\|ZP_04225865.1\| 50S ribosomal protein L17 [Bacillus cereus Rock3-29], gi\|228688603\|g... gi\|229100937, gi... - gi\|229100937\|ref\|ZP_04231741.1\| 50S ribosomal protein L17 [Bacillus cereus Rock3-28], gi\|228682516\|g... gi\|229107824, gi... - gi\|229107824\|ref\|ZP_04237460.1\| 50S ribosomal protein L17 [Bacillus cereus Rock1-15], gi\|228675673\|g... gi\|228669685, gi... - gi\|229113814\|ref\|ZP_04243249.1\| 50S ribosomal protein L17 [Bacillus cereus Rock1-3], gi\|228669685\|gb... gi\|228663701, gi... - gi\|229119800\|ref\|ZP_04249061.1\| 50S ribosomal protein L17 [Bacillus cereus 95/8201], gi\|228663701\|gb... gi\|228657847, gi... - gi\|229125655\|ref\|ZP_04254687.1\| 50S ribosomal protein L17 [Bacillus cereus BDRD-Cer4], gi\|228657847\|... RL17_BACWK - 50S ribosomal protein L17 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplQ PE=3 SV=1 gi\|228652359, gi... - gi\|229131146\|ref\|ZP_04260058.1\| 50S ribosomal protein L17 [Bacillus cereus BDRD-ST196], gi\|228652359... gi\|228646522, gi... - gi\|229136984\|ref\|ZP_04265611.1\| 50S ribosomal protein L17 [Bacillus cereus BDRD-ST26], gi\|228646522\|... gi\|228640565, gi... - gi\|229142944\|ref\|ZP_04271385.1\| 50S ribosomal protein L17 [Bacillus cereus BDRD-ST24], gi\|228640565\|... gi\|228634963, gi... - gi\|229148547\|ref\|ZP_04276803.1\| 50S ribosomal protein L17 [Bacillus cereus m1550], gi\|228634963\|gb\|E... gi\|228629597, gi... - gi\|229153916\|ref\|ZP_04282046.1\| 50S ribosomal protein L17 [Bacillus cereus ATCC 4342], gi\|228629597\|... gi\|229159311, gi... - gi\|229159311\|ref\|ZP_04287335.1\| 50S ribosomal protein L17 [Bacillus cereus R309803], gi\|228624203\|gb... gi\|229165126, gi... - gi\|229165126\|ref\|ZP_04292921.1\| 50S ribosomal protein L17 [Bacillus cereus AH621], gi\|228618389\|gb\|E... gi\|228612529, gi... - gi\|229170989\|ref\|ZP_04298590.1\| 50S ribosomal protein L17 [Bacillus cereus MM3], gi\|228612529\|gb\|EEK... gi\|228606781, gi... - gi\|229176738\|ref\|ZP_04304142.1\| 50S ribosomal protein L17 [Bacillus cereus 172560W], gi\|228606781\|gb... gi\|229182532, gi... - gi\|229182532\|ref\|ZP_04309783.1\| 50S ribosomal protein L17 [Bacillus cereus BGSC 6E1], gi\|228600987\|g... gi\|228595097, gi... - gi\|229188423\|ref\|ZP_04315471.1\| 50S ribosomal protein L17 [Bacillus cereus ATCC 10876], gi\|228595097... gi\|229194528, gi... - gi\|229194528\|ref\|ZP_04321331.1\| 50S ribosomal protein L17 [Bacillus cereus m1293], gi\|228588994\|gb\|E... RL17_BACAA - 50S ribosomal protein L17 OS=Bacillus anthracis (strain A0248) GN=rplQ PE=3 SV=1 gi\|254686637 - gi\|254686637\|ref\|ZP_05150496.1\| 50S ribosomal protein L17 [Bacillus anthracis str. CNEVA-9066] gi\|254726283 - gi\|254726283\|ref\|ZP_05188065.1\| 50S ribosomal protein L17 [Bacillus anthracis str. A1055] gi\|254735288 - gi\|254735288\|ref\|ZP_05192996.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Western North Ame... gi\|254739480 - gi\|254739480\|ref\|ZP_05197178.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Kruger B] gi\|254755534 - gi\|254755534\|ref\|ZP_05207568.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Vollum] gi\|254756843 - gi\|254756843\|ref\|ZP_05208871.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Australia 94] RL17_BACC3 - 50S ribosomal protein L17 OS=Bacillus cereus (strain 03BB102) GN=rplQ PE=3 SV=1 RL17_BACAC - 50S ribosomal protein L17 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplQ PE=3 SV=1 gi\|228860791, gi... - gi\|228898891\|ref\|ZP_04063173.1\| 50S ribosomal protein L17 [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228905935, gi... - gi\|228905935\|ref\|ZP_04069832.1\| 50S ribosomal protein L17 [Bacillus thuringiensis IBL 200], gi\|22885... gi\|228912877, gi... - gi\|228912877\|ref\|ZP_04076524.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar pulsiensis... gi\|228840613, gi... - gi\|228919088\|ref\|ZP_04082467.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar huazhongen... gi\|228925391, gi... - gi\|228925391\|ref\|ZP_04088487.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar pondicheri... gi\|228931640, gi... - gi\|228931640\|ref\|ZP_04094546.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar andalousie... gi\|228822274, gi... - gi\|228937441\|ref\|ZP_04100087.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar berliner A... gi\|228815776, gi... - gi\|228943943\|ref\|ZP_04106328.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar monterrey ... gi\|228950686, gi... - gi\|228950686\|ref\|ZP_04112820.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar kurstaki s... gi\|228956579, gi... - gi\|228956579\|ref\|ZP_04118375.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar pakistani ... gi\|228963238, gi... - gi\|228963238\|ref\|ZP_04124407.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar sotto str.... gi\|228970327, gi... - gi\|228970327\|ref\|ZP_04130986.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar thuringien... gi\|228782867, gi... - gi\|228976897\|ref\|ZP_04137309.1\| 50S ribosomal protein L17 [Bacillus thuringiensis Bt407], gi\|2287828... gi\|228983393, gi... - gi\|228983393\|ref\|ZP_04143606.1\| 50S ribosomal protein L17 [Bacillus thuringiensis serovar tochigiens... gi\|229009647, gi... - gi\|229009647\|ref\|ZP_04166873.1\| 50S ribosomal protein L17 [Bacillus mycoides DSM 2048], gi\|228751669... gi\|228745762, gi... - gi\|229015539\|ref\|ZP_04172536.1\| 50S ribosomal protein L17 [Bacillus cereus AH1273], gi\|228745762\|gb\|... gi\|229021750, gi... - gi\|229021750\|ref\|ZP_04178330.1\| 50S ribosomal protein L17 [Bacillus cereus AH1272], gi\|228739537\|gb\|... gi\|228733374, gi... - gi\|229027986\|ref\|ZP_04184139.1\| 50S ribosomal protein L17 [Bacillus cereus AH1271], gi\|228733374\|gb\|... gi\|229041043, gi... - gi\|229041043\|ref\|ZP_04189806.1\| 50S ribosomal protein L17 [Bacillus cereus AH676], gi\|228727340\|gb\|E... gi\|229053984, gi... - gi\|229053984\|ref\|ZP_04195418.1\| 50S ribosomal protein L17 [Bacillus cereus AH603], gi\|228721402\|gb\|E... gi\|228715262, gi... - gi\|229067903\|ref\|ZP_04201220.1\| 50S ribosomal protein L17 [Bacillus cereus F65185], gi\|228715262\|gb\|... RL17_BACC2 - 50S ribosomal protein L17 OS=Bacillus cereus (strain G9842) GN=rplQ PE=3 SV=1 RL17_BACC0 - 50S ribosomal protein L17 OS=Bacillus cereus (strain AH820) GN=rplQ PE=3 SV=1 RL17_BACC7 - 50S ribosomal protein L17 OS=Bacillus cereus (strain AH187) GN=rplQ PE=3 SV=1 RL17_BACC4 - 50S ribosomal protein L17 OS=Bacillus cereus (strain B4264) GN=rplQ PE=3 SV=1 gi\|75764304, gi\|... - gi\|75764304\|ref\|ZP_00743840.1\| LSU ribosomal protein L17P [Bacillus thuringiensis serovar israelensi... RL17_BACCQ - 50S ribosomal protein L17 OS=Bacillus cereus (strain Q1) GN=rplQ PE=3 SV=1 RL17_BACAH - 50S ribosomal protein L17 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplQ PE=3 SV=1 RL17_BACHK - 50S ribosomal protein L17 OS=Bacillus thuringiensis subsp. konkukian GN=rplQ PE=3 SV=1 RL17_BACAN - 50S ribosomal protein L17 OS=Bacillus anthracis GN=rplQ PE=3 SV=1 RL17_BACCZ - 50S ribosomal protein L17 OS=Bacillus cereus (strain ZK / E33L) GN=rplQ PE=3 SV=1 gi\|49177099, gi\|... - gi\|49183172\|ref\|YP_026424.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Sterne], gi\|49177099... RL17_BACHK - 50S ribosomal protein L17 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplQ PE=3 SV=... RL17_BACC1 - 50S ribosomal protein L17 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplQ PE=3 SV=1 gi\|47500542, gi\|... - gi\|47525394\|ref\|YP_016743.1\| 50S ribosomal protein L17 [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|172079838, gi... - gi\|177656190\|ref\|ZP_02937171.1\| ribosomal protein L17 [Bacillus anthracis str. A0174], gi\|172079838\|... gi\|190567314, gi... - gi\|190567314\|ref\|ZP_03020228.1\| ribosomal protein L17 [Bacillus anthracis Tsiankovskii-I], gi\|190561... gi\|170689685, gi... - gi\|170689685\|ref\|ZP_02880863.1\| ribosomal protein L17 [Bacillus anthracis str. A0465], gi\|170666356\|... gi\|170125623, gi... - gi\|170709467\|ref\|ZP_02899870.1\| ribosomal protein L17 [Bacillus anthracis str. A0389], gi\|170125623\|... gi\|206732862, gi... - gi\|206972288\|ref\|ZP_03233235.1\| 50S ribosomal protein L17 [Bacillus cereus AH1134], gi\|206732862\|gb\|... gi\|206743744, gi... - gi\|206978031\|ref\|ZP_03238916.1\| 50S ribosomal protein L17 [Bacillus cereus H3081.97], gi\|206743744\|g... gi\|195991369, gi... - gi\|196036000\|ref\|ZP_03103401.1\| ribosomal protein L17 [Bacillus cereus W], gi\|195991369\|gb\|EDX55336.... gi\|196041076, gi... - gi\|196041076\|ref\|ZP_03108372.1\| ribosomal protein L17 [Bacillus cereus NVH0597-99], gi\|196028011\|gb\|... RL17_BACCR - 50S ribosomal protein L17 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|30260329, gi\|... - gi\|30260329\|ref\|NP_842706.1\| 50S ribosomal protein L17 [Bacillus anthracis str. Ames], gi\|30253650\|g... gi\|47570250, gi\|... - gi\|47570250\|ref\|ZP_00240901.1\| ribosomal protein L17 [Bacillus cereus G9241], gi\|47553074\|gb\|EAL1147... gi\|164710918, gi... - gi\|165873350\|ref\|ZP_02217951.1\| ribosomal protein L17 [Bacillus anthracis str. A0488], gi\|164710918\|... RL17_BACCN - 50S ribosomal protein L17 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-... gi\|167642074, gi... - gi\|167642074\|ref\|ZP_02400298.1\| ribosomal protein L17 [Bacillus anthracis str. A0193], gi\|167509961\|...	172.0	[0..1]	[120..1]
RL17_THICR - 50S ribosomal protein L17 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplQ PE=3 SV=1	171.0	[0..2]	[120..6]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRKLGRTT SQRKALLRDL ATDLIINERI ETTEARAKEL RAVIEKMITL GKRGDLHARR  60
   61 QAAAFIRKEV ANSETGQDAL QKLFSDIAPR YQDRQGGYTR IMKLGPRRGD GAPMVIIELV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	2gyaL
Description:	No description for 2gyaL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits