YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23200146, gi\|...
Organism:	Homo sapiens
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23200146, gi|....

Description	E-value	Query Range	Subject Range
gi\|50758583 - gi\|50758583\|ref\|XP_417326.1\| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24) (M...	235.0	[0..2]	[194..832]
gi\|68375175 - gi\|68375175\|ref\|XP_698601.1\| PREDICTED: similar to Matrix metalloproteinase-17 precursor (MMP-17) (M...	231.0	[0..2]	[194..870]
gi\|73950335 - gi\|73950335\|ref\|XP_544383.2\| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted) [...	224.0	[0..2]	[194..431]
gi\|113423997 - gi\|113423997\|ref\|XP_001133320.1\| PREDICTED: similar to Matrix metalloproteinase-17 precursor (MMP-17...	223.0	[0..3]	[194..534]
gi\|74138140 - gi\|74138140\|dbj\|BAE28570.1\| unnamed protein product [Mus musculus]	223.0	[0..4]	[192..292]
gi\|76640525 - gi\|76640525\|ref\|XP_597651.2\| PREDICTED: similar to Matrix metalloproteinase-15 precursor (MMP-15) (M...	221.0	[0..2]	[194..368]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDACNVNIFD AIAEIGNQLY LFKDGKYWRF SEGRGSRPQG PFLIADKWPA LPRKLDSVFE  60
   61 EPLSKKLFFF SGRQVWVYTG ASVLGPRRLD KLGLGADVAQ VTGALRSGRG KMLLFSGRRL 120
  121 WRFDVKAQMV DPRSASEVDR MFPGVPLDTH DVFQFREKAY FCQDRFYWRV SSRSELNQVD 180
  181 QVGYVTYDIL QCPED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1itvA
Description:	Gelatinase B (MMP-9)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.425632672898257	bayes_pls_golite062009
binding	0.0517659329517449	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: