YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21730829, gi\|...
Organism:	Homo sapiens
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21730829, gi|....

Description	E-value	Query Range	Subject Range
gi\|29888033 - gi\|29888033\|gb\|AAP03136.1\| putative classical MHC class I antigen [Equus caballus]	282.0	[0..3]	[192..18]
gi\|108743887 - gi\|108743887\|gb\|ABG02212.1\| MHC class I antigen [Pan troglodytes]	281.0	[0..4]	[192..22]
gi\|37958135 - gi\|37958135\|gb\|AAP40298.1\| MHC class I antigen [Saimiri sciureus sciureus]	280.0	[0..4]	[192..22]
gi\|84626036, gi\|... - gi\|84626036\|gb\|ABC59611.1\| MHC class I antigen [Homo sapiens], gi\|55560967\|gb\|AAV53345.1\| MHC class ...	280.0	[0..4]	[192..22]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQDASDGLQR LHMLQISYFR DPYHVWYQGN ASLGGHLTHV LEGPDTNTTI IQLQPLQEPE  60
   61 SWARTQSGLQ SYLLQFHGLV RLVHQERTLA FPLTIRCFLG CELPPEGSRA HVFFEVAVNG 120
  121 SSFVSFRPER ALWQADTQVT SGVVTFTLQQ LNAYNRTRYE LREFLEDTCV QYVQKHISAE 180
  181 NTKGSQTSRS YTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1l8jA
Description:	Endothelial protein C receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits