YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22219212, gi\|...
Organism:	Homo sapiens
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22219212, gi|....

Description	E-value	Query Range	Subject Range
gi\|50748057 - gi\|50748057\|ref\|XP_421089.1\| PREDICTED: similar to TNF receptor-associated factor 6 [Gallus gallus]	151.0	[0..1]	[153..348]
gi\|93278159 - gi\|93278159\|gb\|ABF06558.1\| TNF receptor-associated factor 6 [Bos taurus]	146.0	[0..1]	[158..367]
TRF6A_XENLA - TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a PE=1 SV=1	146.0	[0..3]	[159..383]
gi\|22219211 - gi\|22219211\|pdb\|1LB4\|A Chain A, Traf6 Apo Structure	145.0	[0..2]	[160..1]
gi\|114637057, gi... - gi\|114637057\|ref\|XP_001154136.1\| PREDICTED: TNF receptor-associated factor 6 isoform 2 [Pan troglody...	145.0	[0..1]	[158..347]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQCNGIYIWK IGNFGMHLKC QEEEKPVVIH SPGFYTGKPG YKLCMRLHLQ LPTAQRCANY  60
   61 ISLFVHTMQG EYDSHLPWPF QGTIRLTILD QSEAPVRQNH EEIMDAKPEL LAFQRPTIPR 120
  121 NPKGFGYVTF MHLEALRQRT FIKDDTLLVR CEVSTRFDLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1lb5A
Description:	TNF receptor associated factor 6 (TRAF6)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.179237686199017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: