YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22218770
Organism:	Homo sapiens
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22218770.

Description	E-value	Query Range	Subject Range
gi\|76622425, gi\|... - gi\|76622425\|ref\|XP_594479.2\| PREDICTED: similar to Lamin B2 [Bos taurus], gi\|194668843\|ref\|XP_594479...	186.0	[0..2]	[120..474]
gi\|60653745, gi\|... - gi\|60653745\|gb\|AAX29566.1\| lamin B2 [synthetic construct], gi\|32880115\|gb\|AAP88888.1\| lamin B2 [synt...	184.0	[0..2]	[119..447]
LMNB2 - lamin B2 gi\|61361812, gi\|... - gi\|61361812\|gb\|AAX42107.1\| lamin B2 [synthetic construct], gi\|190691939\|gb\|ACE87744.1\| lamin B2 prot...	184.0	[0..2]	[119..447]
LMNB2_CHICK - Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1	182.0	[0..2]	[119..450]
gi\|114674556 - gi\|114674556\|ref\|XP_524044.2\| PREDICTED: lamin B2 [Pan troglodytes]	182.0	[0..2]	[119..420]
gi\|73987493 - gi\|73987493\|ref\|XP_542188.2\| PREDICTED: similar to Lamin B2 [Canis familiaris]	180.0	[0..2]	[119..400]
gi\|4678403, gi\|1... - gi\|4678403\|emb\|CAB41015.1\| lamin B2 [Danio rerio], gi\|18858981\|ref\|NP_571077.1\| lamin b2 [Danio reri...	178.0	[0..2]	[121..433]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHRTSGRVA VEEVDEEGKF VRLRNKSNED QSMGNWQIKR QNGDDPLLTY RFPPKFTLKA  60
   61 GQVVTIWAAG AGATHSPPTD LVWKAQNTWG CGNSLRTALI NSTGEEVAMR KLVRSVTVVE 120
  121 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1ifrA
Description:	Lamin A/C globular tail domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits