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View Structure Prediction Details

Protein: gi|328635
Organism: Human immunodeficiency virus 1
Length: 101 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|328635.

Description E-value Query
Range
Subject
Range
gi|108752033 - gi|108752033|gb|ABG02913.1| chimeric TaReNef-DC-LAMP protein [synthetic construct]
203.0 [0..2] [101..28]
gi|57338569, gi|... - gi|57338569|gb|AAW49363.1| tat protein [Human immunodeficiency virus 1], gi|46486640|gb|AAS98746.1| ...
189.0 [0..1] [101..1]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPVDPRLEP WKHPGSQPKA ACTSCYCKKC CFHCQVCFTT KGLGISYGRK KRRQRRRAPQ  60
   61 DSQTHQVSLP KQPASQARGD PTGPKESKKK VERETETDPV D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1tacA
Description: HIV-1 TAT CYS-, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle