YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465712
Organism:	Haemophilus influenzae
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465712.

Description	E-value	Query Range	Subject Range
NAPB_HAEIN - Periplasmic nitrate reductase, electron transfer subunit OS=Haemophilus influenzae (strain ATCC 5190... gi\|68248952, gi\|... - gi\|68248952\|ref\|YP_248064.1\| diheme cytochrome C NapB [Haemophilus influenzae 86-028NP], gi\|68057151... NAPB_HAEIN - Diheme cytochrome c napB OS=Haemophilus influenzae GN=napB PE=1 SV=1	200.0	[0..1]	[123..28]
gi\|145631407 - gi\|145631407\|ref\|ZP_01787177.1\| adenylate kinase [Haemophilus influenzae 22.4-21] gi\|144979173, gi... - gi\|145628703\|ref\|ZP_01784503.1\| diheme cytochrome C NapB [Haemophilus influenzae 22.1-21], gi\|144979... gi\|229846437, gi... - gi\|229846437\|ref\|ZP_04466545.1\| hypothetical protein CGSHi7P49H1_07190 [Haemophilus influenzae 7P49H... gi\|229812811, gi... - gi\|229844562\|ref\|ZP_04464702.1\| hypothetical protein CGSHi6P18H1_09610 [Haemophilus influenzae 6P18H... gi\|53733216 - gi\|53733216\|ref\|ZP_00156186.2\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus inf... gi\|53732958 - gi\|53732958\|ref\|ZP_00155354.2\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus inf... gi\|48868882 - ref\|ZP_00322170.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Haemophilus influenzae 86-0... gi\|144982944 - gi\|144982944\|gb\|EDJ90453.1\| adenylate kinase [Haemophilus influenzae R3021] gi\|148718734, gi... - gi\|148827492\|ref\|YP_001292245.1\| hypothetical protein CGSHiGG_04545 [Haemophilus influenzae PittGG],... gi\|148825369, gi... - gi\|148825369\|ref\|YP_001290122.1\| adenylate kinase [Haemophilus influenzae PittEE], gi\|148715529\|gb\|A... gi\|145272337, gi... - gi\|145638742\|ref\|ZP_01794351.1\| adenylate kinase [Haemophilus influenzae PittII], gi\|145272337\|gb\|ED...	199.0	[0..1]	[123..25]
gi\|113874544, gi... - gi\|150377296\|ref\|YP_001313891.1\| nitrate reductase cytochrome c-type subunit (NapB) [Sinorhizobium m...	198.0	[0..3]	[122..25]
gi\|82720355, gi\|... - gi\|82742271\|ref\|ZP_00904969.1\| conserved hypothetical periplasmic nitrate reductase small subunit pr... gi\|146293002, gi... - gi\|77812812\|ref\|ZP_00812095.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella putref... gi\|124509782, gi... - gi\|124546730\|ref\|ZP_01705765.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella putre...	197.0	[0..8]	[121..35]
gi\|117920346, gi... - gi\|78684948\|ref\|ZP_00849729.1\| conserved hypothetical periplasmic nitrate reductase small subunit pr...	196.0	[0..8]	[121..35]
gi\|68542544, gi\|... - gi\|68542544\|ref\|ZP_00582272.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella baltic...	196.0	[0..7]	[121..34]
gi\|78689745, gi\|... - gi\|78689745\|ref\|ZP_00854403.1\| conserved hypothetical periplasmic nitrate reductase small subunit pr...	196.0	[0..8]	[121..35]
gi\|77977005 - gi\|77977005\|ref\|ZP_00832467.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia interm...	194.0	[0..2]	[122..32]
gi\|68514958, gi\|... - gi\|68547313\|ref\|ZP_00586851.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella amazon...	194.0	[0..7]	[121..30]
gi\|217973549, gi... - gi\|217973549\|ref\|YP_002358300.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella balt... gi\|160860581, gi... - gi\|160875059\|ref\|YP_001554375.1\| nitrate reductase cytochrome c-type subunit (NapB) [Shewanella balt...	194.0	[0..7]	[121..34]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPAVGKDLT QAAENIPPAF HNAPRQGELP ALNYVNQPPM VPHSVANYQV TKNVNQCLNC  60
   61 HSPENSRLSG ATRISPTHFM DRDGKVGSSS SPRRYFCLQC HVSQANVDPI VPNDFKPMKG 120
  121 YGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1jniA
Description:	Periplasmic nitrate reductase subunit NapB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits