YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465533, gi\|...
Organism:	Thermotoga maritima
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465533, gi|....

Description	E-value	Query Range	Subject Range
gi\|126698846, gi... - gi\|126698846\|ref\|YP_001087743.1\| chromosome partition protein [Clostridium difficile 630], gi\|115250...	194.0	[0..1]	[185..492]
gi\|90575139, gi\|... - gi\|90575139\|ref\|ZP_01231624.1\| hypothetical protein CdifQ_02001251 [Clostridium difficile QCD-32g58]...	193.0	[0..1]	[185..418]
gi\|52785574, gi\|... - gi\|52785574\|ref\|YP_091403.1\| hypothetical protein BLi01815 [Bacillus licheniformis ATCC 14580], gi\|5...	191.0	[0..1]	[186..489]
gi\|2633966, gi\|1... - gi\|2633966\|emb\|CAB13467.1\| chromosome segregation SMC protein homolg [Bacillus subtilis subsp. subti... SMC_BACSU - Chromosome partition protein smc OS=Bacillus subtilis GN=smc PE=1 SV=2	190.0	[0..1]	[186..489]
gi\|229129124, gi... - gi\|229129124\|ref\|ZP_04258097.1\| Chromosome partition protein smc [Bacillus cereus BDRD-Cer4], gi\|228... gi\|30021936, gi\|... - gi\|30021936\|ref\|NP_833567.1\| chromosome partition protein smc [Bacillus cereus ATCC 14579], gi\|29897...	190.0	[0..3]	[186..491]
gi\|42738867, gi\|... - gi\|42782940\|ref\|NP_980187.1\| chromosome segregation SMC protein [Bacillus cereus ATCC 10987], gi\|427... gi\|217063100, gi... - gi\|217961268\|ref\|YP_002339836.1\| chromosome segregation SMC protein [Bacillus cereus AH187], gi\|2170... gi\|229197959, gi... - gi\|229197959\|ref\|ZP_04324673.1\| Chromosome partition protein smc [Bacillus cereus m1293], gi\|2285854... gi\|229140492, gi... - gi\|229140492\|ref\|ZP_04269047.1\| Chromosome partition protein smc [Bacillus cereus BDRD-ST26], gi\|228...	189.0	[0..3]	[186..491]
gi\|75762037, gi\|... - gi\|75762037\|ref\|ZP_00741949.1\| Chromosome partition protein smc [Bacillus thuringiensis serovar isra...	189.0	[0..3]	[186..491]
gi\|47570281, gi\|... - gi\|47570281\|ref\|ZP_00240930.1\| reticulocyte binding protein [Bacillus cereus G9241], gi\|47553045\|gb\|...	189.0	[0..3]	[186..491]
gi\|51975102, gi\|... - gi\|52141633\|ref\|YP_085189.1\| chromosome segregation SMC protein [Bacillus cereus E33L], gi\|51975102\|...	189.0	[0..3]	[186..491]
gi\|89208810, gi\|... - gi\|89208810\|ref\|ZP_01187295.1\| Chromosome segregation protein SMC [Bacillus weihenstephanensis KBAB4...	189.0	[0..3]	[186..491]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKEMIERDMR EYRGFSRAVR AVFEEKERFP GLVDVVSNLI EVDEKYSLAV SVLLGGTAQN  60
   61 IVVRNVDTAK AIVEFLKQNE AGRVTILPLD LIDGSFNRIS GLENERGFVG YAVDLVKFPS 120
  121 DLEVLGGFLF GNSVVVETLD DAIRMKKKYR LNTRIATLDG ELISGRGAIT GGREERSSNV 180
  181 FERRIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1gxjA
Description:	Smc hinge domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.326629591173775	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: