YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21465470, gi\|...
Organism:	Homo sapiens
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21465470, gi|....

Description	E-value	Query Range	Subject Range
gi\|74199643 - gi\|74199643\|dbj\|BAE41492.1\| unnamed protein product [Mus musculus]	132.0	[0..1]	[100..62]
gi\|73958203 - gi\|73958203\|ref\|XP_852066.1\| PREDICTED: similar to Mitotic spindle assembly checkpoint protein MAD1 ...	126.0	[0..1]	[100..601]
gi\|2947031, gi\|4... - ref\|NP_003541.1\| MAD1-like 1 [Homo sapiens], gi\|2947031\|gb\|AAC52059.1\| TXBP181 [Homo sapiens]	125.0	[0..1]	[100..484]
gi\|49115165, gi\|... - gi\|49115165\|gb\|AAH73210.1\| Mad1-A protein [Xenopus laevis], gi\|148230881\|ref\|NP_001080972.1\| spindle...	116.0	[0..2]	[100..487]
gi\|55742174, gi\|... - gi\|55742174\|ref\|NP_001006927.1\| MAD1 mitotic arrest deficient-like 1 [Xenopus (Silurana) tropicalis]... gi\|55742174 - ref\|NP_001006927.1\| MAD1 mitotic arrest deficient-like 1 [Xenopus tropicalis]	115.0	[0..2]	[100..487]
gi\|114611968 - gi\|114611968\|ref\|XP_518933.2\| PREDICTED: MAD1-like 1 protein [Pan troglodytes]	115.0	[0..1]	[100..485]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAEQSFLFS REEADTLRLK VEELEGERSR LEEEKRMLEA QLERRALQGD YDQSRTKVLH  60
   61 MSLNPTSVAR QRLREDHSQL QAECERLRGL LRAMERGGTV

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Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1go4E
Description:	Mitotic arrest deficient-like 1, Mad1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits