YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12084776, gi\|...
Organism:	Escherichia coli
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12084776, gi|....

Description	E-value	Query Range	Subject Range
gi\|81248099, gi\|... - gi\|82546688\|ref\|YP_410635.1\| putative penicillin G acylase [Shigella boydii Sb227], gi\|81248099\|gb\|A...	286.0	[0..1]	[260..21]
PAC_ECOLX - Penicillin G acylase OS=Escherichia coli GN=pac PE=1 SV=2 gi\|209921807, gi... - gi\|209921807\|ref\|YP_002295891.1\| penicillin G acylase [Escherichia coli SE11], gi\|209915066\|dbj\|BAG8... gi\|193063704, gi... - gi\|193063704\|ref\|ZP_03044792.1\| penicillin amidase [Escherichia coli E22], gi\|192930691\|gb\|EDV83297....	285.0	[0..1]	[260..27]
gi\|75258422 - gi\|75258422\|ref\|ZP_00729853.1\| COG2366: Protein related to penicillin acylase [Escherichia coli E22]	285.0	[0..1]	[260..21]
gi\|75198156 - gi\|75198156\|ref\|ZP_00708226.1\| COG2366: Protein related to penicillin acylase [Escherichia coli HS]	284.0	[0..1]	[260..21]
gi\|75179314 - gi\|75179314\|ref\|ZP_00699318.1\| COG2366: Protein related to penicillin acylase [Shigella boydii BS512...	279.0	[0..1]	[260..21]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSSSEIKIV RDEYGMPHIY ANDTWHLFYG YGYVVAQDRL FQMEMARRST QGTVAEVLGK  60
   61 DFVKFDKDIR RNYWPDAIRA QIAALSPEDM SILQGYADGM NAWIDKVNTN PETLLPKQFN 120
  121 TFGFTPKRWE PFDVAMIFVG TMANRFSDST SEIDNLALLT ALKDKYGVSQ GMAVFNQLKW 180
  181 LVNPSAPTTI AVQESNYPLK FNQQNSQTAA LLPRYDLPAP MLDRPAKGAD GALLALAAGK 240
  241 NRETIAAQFA QGGANGLAGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1e3aA
Description:	Penicillin acylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits