YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20151157, gi\|...
Organism:	Homo sapiens
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20151157, gi|....

Description	E-value	Query Range	Subject Range
gi\|114656649 - gi\|114656649\|ref\|XP_001157994.1\| PREDICTED: tumor protein p53 binding protein, 1 isoform 1 [Pan trog...	254.0	[0..1]	[259..755]
gi\|488592, gi\|21... - gi\|488592\|gb\|AAA21596.1\| p53-binding protein, pir\|\|I38604 p53-binding protein 1 - human (fragment)	254.0	[0..1]	[259..769]
gi\|76647501 - gi\|76647501\|ref\|XP_881351.1\| PREDICTED: similar to tumor protein p53 binding protein, 1 isoform 7 [B...	254.0	[0..1]	[259..488]
gi\|74205626 - gi\|74205626\|dbj\|BAE21103.1\| unnamed protein product [Mus musculus]	251.0	[0..2]	[259..432]
gi\|73999887 - gi\|73999887\|ref\|XP_859793.1\| PREDICTED: similar to tumor protein p53 binding protein, 1 isoform 4 [C...	249.0	[0..1]	[259..1678]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEEQRGPLP LNKTLFLGYA FLLTMATTSD KLASRSKLPD GPTGSSEEEE EFLEIPPFNK  60
   61 QYTESQLRAG AGYILEDFNE AQCNTAYQCL LIADQHCRTR KYFLCLASGI PCVSHVWVHD 120
  121 SCHANQLQNY RNYLLPAGYS LEEQRILDWQ PRENPFQNLK VLLVSDQQQN FLELWSEILM 180
  181 TGGAASVKQH HSSAHNKDIA LGVFDVVVTD PSCPASVLKC AEALQLPVVS QEWVIQCLIV 240
  241 GERIGFKQHP KYKHDYVSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.30103
Match:	1kzyC
Description:	53BP1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits