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View Structure Prediction Details

Protein: gi|20150089
Organism: Homo sapiens
Length: 108 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20150089.

Description E-value Query
Range		 Subject
Range
gi|115361495 - gi|115361495|gb|ABI95849.1| prion protein [Ovis aries]
 217.0 [0..1] [108..122]
PRIO2_TRAST - Major prion protein 2 OS=Tragelaphus strepsiceros PE=3 SV=1
 199.0 [0..10] [108..131]
gi|74186102 - gi|74186102|dbj|BAE34221.1| unnamed protein product [Mus musculus]
 198.0 [0..10] [108..127]
gi|73697719 - gi|73697719|gb|AAZ81475.1| prion protein [Rangifer tarandus granti]
 198.0 [0..7] [108..128]
gi|19698516 - gi|19698516|gb|AAL93185.1|AF486138_1 prion protein variant 110P [Capra hircus]
 197.0 [0..10] [108..131]
PRIO_MOSCH - Major prion protein OS=Moschus chrysogaster GN=PRNP PE=3 SV=1
 197.0 [0..10] [108..131]

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Predicted Domain #1
Region A:
Residues: [1-108] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVVGGLGGY MLGSAMSRPI IHFGSDYEDR YYRENMHRYP NQVYYRPMDE YSNQNNFVHD  60
   61 CVNITIKQHT VTTTTKGENF TETDVKMMER VVEQMCITQY ERESQAYY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.30103
Match: 1y2sA
Description: Ovine Prion Protein Variant R168
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.533405820900955 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle