YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18655560
Organism:	Mus musculus
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18655560.

Description	E-value	Query Range	Subject Range
gi\|73999473 - gi\|73999473\|ref\|XP_544116.2\| PREDICTED: similar to vesicle transport through interaction with t-SNAR...	84.0	[0..3]	[65..306]
gi\|46138669, gi\|... - gi\|46138669\|ref\|XP_391025.1\| hypothetical protein FG10849.1 [Gibberella zeae PH-1], gi\|42551459\|gb\|E...	83.0	[0..3]	[65..136]
gi\|481203 - gi\|481203\|pir\|\|S38309 SNAP-25 protein - chicken	81.0	[0..2]	[65..20]
gi\|91084329 - gi\|91084329\|ref\|XP_972528.1\| PREDICTED: similar to Serine/threonine-protein phosphatase alpha-1 isof...	79.0	[0..5]	[64..1395]
gi\|4104432 - gi\|4104432\|gb\|AAD02039.1\| GES30 [Mus musculus]	79.0	[0..3]	[65..137]
gi\|3822409\|gb\|AA... - synaptosome-associated protein SNAP-25-1; SNAP-25 type 1 [Leucophaea maderae] gi\|3822409 - gi\|3822409\|gb\|AAC69874.1\| synaptosome-associated protein SNAP-25-1; SNAP-25 type 1 [Leucophaea mader...	77.0	[0..1]	[65..26]
gi\|47222711 - gi\|47222711\|emb\|CAG00145.1\| unnamed protein product [Tetraodon nigroviridis]	77.0	[0..2]	[65..20]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMNRATQS IERSHRIATE TDQIGTEIIE ELGEQRDQLE RTKSRLVNTN ENLSKSRKIL  60
   61 RSMSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	1gl2C
Description:	Vesicle ransport v-SNARE protein VTI1b
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits