YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18655462, gi\|...
Organism:	Homo sapiens
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18655462, gi|....

Description	E-value	Query Range	Subject Range
gi\|73995659 - gi\|73995659\|ref\|XP_856724.1\| PREDICTED: similar to breakpoint cluster region isoform 2 isoform 2 [Ca...	144.0	[0..2]	[72..2]
gi\|11038641, gi\|... - gi\|29412\|emb\|CAA68676.1\| unnamed protein product [Homo sapiens], ref\|NP_067585.1\| breakpoint cluster...	143.0	[0..2]	[72..2]
gi\|94389394 - gi\|94389394\|ref\|XP_988957.1\| PREDICTED: similar to breakpoint cluster region isoform 2 isoform 3 [Mu...	142.0	[0..2]	[72..2]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XVDPVGFAEA WKAQFPDSEP PRXELRSVGD IEQELERAKA SIRRLEQEVN QERFRXIYLQ  60
   61 TLLAKEKKSY DR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1k1fA
Description:	Bcr-Abl oncoprotein oligomerization domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits